Gene Snas_5053 details

Gene Information

• Locus tag: Snas_5053
• ID: 8886260
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Stackebrandtia nassauensis DSM 44728
• Kingdom: Bacteria
• Replicon accession: NC_013947
• Strand: +
• Start bp: 5360708
• End bp: 5364247
• Gene Length: 3540 bp
• Protein Length: 1179 aa
• Translation table: 11
• GC content: 67%
• Product: DNA polymerase III subunit alpha
• Protein accession: YP_003513783
• Protein GI: 291302505

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.384157
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 0.354735
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCGAAGG ATTTCGTCCA CCTTCACGTT CACACGGAGT ATTCGATGCT GGACGGGGCC 
GCCAAGATGC GGCCCATGTT CGCCGAGGTG GAACGGCTGG GGATGTCGTC CATCGCCATG 
ACCGACCACG GCAACATGTA CGGCGCCTAC GAGTTCTACC AGGAGGCCAA GAAGACCGGC 
ATCAAGCCGA TCATCGGCAT CGAGGCCTAC CTGGCGCCCG GCGACCGGGC CCACAAGAAG 
CCGGTGCGGT GGGGGCGCCC GGACCAGAAG AGCGACGACG TGTCCGGTGG TGGCGCCTAC 
ACCCACATGA CGATGTGGGC GGCCAACGGC AGCGGCCTGC GGAACCTGCT GAAGCTGTCG 
AGCCTGGCGT CCTTCGAGGG CCAGTACCAG AAGCCGCGCA TGGACGCCGA GCTGTTGTCC 
AAGTACGCCG AGGGCATCAT CGCCACCACC GGCTGCCCGT CGGGTGAGGT GCAGACCCGG 
CTGCGGCTGG ACCAGCCGGA CGAGGCCCTG GCAGCGGCGG CCAAGTACCA GGACATCTTC 
GGCAAGGACA ACTTCTTCCT GGAACTGATG GACCACGGCC TCGACATCGA GACCCGGGTC 
CGCGAGGGCC TGCTGGACAT CAGCAAGAAG CTGGGCCTGC CGCTGCTGGC CACCAACGAC 
TCCCACTACG TGCACCAGCA CGACTCCGAC AACCACGCCG CGCTGCTGTG CGTCCAGTCC 
GGCAAGACCC TCACCGACCC GAACCGGTTC GCGTTCTCCG GCGACGGCTA CTACATCAAG 
TCGCCCGCCG AGATGCGGGA ACTGTGGAGC GAACTGCCCG AGGCCTGCGA CAACACGCTG 
CTGATCGCCG AGCGGATCGA GTCCTACGAG GAGGTCTTCG CCGAGGTCGA CCGGATGCCC 
CGGTTCCCGC TGAAGGAAGG CGAGACCGAG GACATCCTGC TGCGCCGCGA CGTGGAGAAG 
TACACCCCCA ACCGCTTCCC CGACGGTCTG ACCCAGGAGT ACAAGGACCG CATCGACCGG 
GAACTGGGCG TCATGTCCGC GATGGGTTTC TCCGGCTACT TCCTCGTCGT CGGCGACCTG 
GTGCGGTGGG CGAAGTCGCA GAAGATCCCC ACCGGGCCCG GACGTGGTTC GGCCACCGGT 
TCGCTGGTGG CCTACATCCT GCAGATCACC GACCTGGACC CGATCGAGCA CTCGCTGATC 
TTCGAACGGT TCCTCAACCC CGAGCGGGTC TCGCCCCCCG ACATCGACCT CGACTTCGAC 
GAGCGTCGGC GCGGCGAGGT CATGCAGTAC ACCGTCGAGA AGTGGGGCGA GGAGAACGTC 
GCCCAGGTCA TCACCTTCGG CACCATCAAG ACCAAGGCGG CCCTGAAGGA CGCGGCCCGC 
GCGCACCTCG GCCAGCCGGG TTTCGCGGTG GCCGAGCGGA TCGCCAAGGC GCTGCCGCCG 
CCGGTCGCCG CCCAGGACAT TCCGCTGTCG GGCATCGTCG ACCCGAACCA CGAGCGCTAC 
AACGAGGCCG CCGAGGTGCG GGCCCTGGTG GAGAACGAAC CGGAGGTCAA GCAGATCTTC 
GACACCGCGC GCGGCCTGGA GGGGTTGATC CGCAACGCGG GTGTGCACGC GTGCGCGGTC 
ATCATCTCCA GCGTCCCGCT GCTGGGGCAG GTGCCACTGT GGATGCGGCC CGACGGCTCG 
GTCATCACCG GCTGGGACTA TCCGTCCTGT GAGGCCATGG GCCTGCTGAA GATGGACTTC 
CTGGGGCTGC GCAACCTCAC GGTCATCGGT GACGCCATCG ACAACGTCAA ACGCAACCAC 
GGCGTGGAGC TGAGCACCGA GACGATCACG CTGGACGACC CCAAGACCTT CGAACTGCTG 
TGCCGCGGTG AGAGCGCCGG GGTGTTCCAG TTCGAGGGCG CGGGCATGCA GGACCTGCTG 
AAGCGGATGC AGCCCAAGAA GTTCGGCGAC ATCGCCGCCA TCTCGGCCCT GTACCGTCCC 
GGCCCGATGG CCGCCAACGC GCACCTCAAC TACGCCGAGC GCGCCAACGG GCGGCAGTCG 
CCCGAGCCGA TCCACCCCGA GCTGAAGGAC GCGCTGGAGC CGATCCTCGG CGAGACCTTC 
CACCTGCTGG TCTACCAAGA GCAGGTCATG GCGATCGCGC AGCAGCTGGC CGGGTACACC 
CTGGGTGGCG CCGACCTGCT GCGTCGCGCC ATGGGTAAGA AGAAGAAGGA GATCATCGAG 
AAGGAGTTCG AGAAGTTCTC CAACGGCATG ACGGCCAACG GGTACTCCAT GGAGGCGTGC 
CAGACGTTGT GGGACGTCAT GCTCCCGTTC GCCGGTTACG CCTTCAACAA GTCGCACACC 
GCCGGATACG GCCTGGTCAC CTACTGGACC GCCTACCTCA AGGCGAACTA CCCGGCCGAG 
TACATGGCCG CGCTGTTGAC CTCGGTGGGC GACAACAAGG ACAAGTCCGC CCTGTATCTG 
GCCGACTGCC GCAAGCTCGG CATCAAGGTG CTGCCGCCCG ACGTCAACGA GTCGCGGCGC 
AACTTCTCGG CCGTCGGCGG TGACATCCGC TTCGGGCTGG GCGCGATCCG CAACGTCGGC 
ACCGGCGTGG TCGACTCGAT CGTGGCCACC CGCGAGGCCA AGGGCAACTA CGAGTCGTTC 
TCGGACTTCC TGCAGAAGTC GGAACTGCCG GTGTGCAACA AGCGGGTCAT CGAGTCGCTG 
ATCAAGGCGG GTGCCTTCGA CTCGCTGAAG CACTCGCGCA AGGCGCTGTG CGAACGCCAC 
GAGGTGCTGG TCGAGTCCAT CGTGGGCGTC AAGCGCAAGG AGGCCGAGGG CCAGTTCGAC 
CTGTTCGGGG GCATGCTGAC CCCGGATCAG CCGGACGCGG CCACTCCCGG CGGCGACACC 
GACTTCTCCG GCGACGACTG GCCGCGCAAG ACCACCTTGG AGTTCGAGCG GGAGATGCTG 
GGGCTGTACG TCTCCGGGCA CCCGCTGGAG GGCGCGGAGA TGATCCTGCG CAAGAACTCC 
GAGAACCGGA TCGCCGACCT GCTCACCTCG GACATCCCCG ACGGTACCTC GGTGACGATC 
GCGGGGATCA TCTCCAGTCT GGAGCGTCGG GTCACCAAGC AGGGCAAGCC GTGGGCCAAG 
GCGACGGTGG AGGACCTGGA CGCGGCCATC GAGTGCCTGT TCTTCCCCAA GACCTACGAG 
TTCGCCGGGC CGCAGCTGGC CCAGGACCTG GTGGTGGCGG TGCGCGGCAA GCTGAACCGC 
CGCGACGGCG AGATCTCGAT CGTGGCCATG GATCTGGCGC CGCTGGAGAT CAACGAGTCC 
GATCTGGTCA ACGAGCCGAC CCTGACCCTC AACGTGCAGC TGGCCAAGGT CAACGAGCGG 
GTCCTCGACG AGCTCAAGGC GGTGTTGCAG GGCAACCGGG GCGACATGGC GGTGCGGGTG 
AAACTGTGCG CCCCCAACGC CGAGACGCTG CTGGCCCTCG ACGAGCGGTA CAAGGTGGCC 
TCGGGTCCGG GACTGACCTC GGAGCTGAAG AGCCTGCTGG GTGCCGAGTG CCTGGACTGA 

 

Protein sequence

MSKDFVHLHV HTEYSMLDGA AKMRPMFAEV ERLGMSSIAM TDHGNMYGAY EFYQEAKKTG 
IKPIIGIEAY LAPGDRAHKK PVRWGRPDQK SDDVSGGGAY THMTMWAANG SGLRNLLKLS 
SLASFEGQYQ KPRMDAELLS KYAEGIIATT GCPSGEVQTR LRLDQPDEAL AAAAKYQDIF 
GKDNFFLELM DHGLDIETRV REGLLDISKK LGLPLLATND SHYVHQHDSD NHAALLCVQS 
GKTLTDPNRF AFSGDGYYIK SPAEMRELWS ELPEACDNTL LIAERIESYE EVFAEVDRMP 
RFPLKEGETE DILLRRDVEK YTPNRFPDGL TQEYKDRIDR ELGVMSAMGF SGYFLVVGDL 
VRWAKSQKIP TGPGRGSATG SLVAYILQIT DLDPIEHSLI FERFLNPERV SPPDIDLDFD 
ERRRGEVMQY TVEKWGEENV AQVITFGTIK TKAALKDAAR AHLGQPGFAV AERIAKALPP 
PVAAQDIPLS GIVDPNHERY NEAAEVRALV ENEPEVKQIF DTARGLEGLI RNAGVHACAV 
IISSVPLLGQ VPLWMRPDGS VITGWDYPSC EAMGLLKMDF LGLRNLTVIG DAIDNVKRNH 
GVELSTETIT LDDPKTFELL CRGESAGVFQ FEGAGMQDLL KRMQPKKFGD IAAISALYRP 
GPMAANAHLN YAERANGRQS PEPIHPELKD ALEPILGETF HLLVYQEQVM AIAQQLAGYT 
LGGADLLRRA MGKKKKEIIE KEFEKFSNGM TANGYSMEAC QTLWDVMLPF AGYAFNKSHT 
AGYGLVTYWT AYLKANYPAE YMAALLTSVG DNKDKSALYL ADCRKLGIKV LPPDVNESRR 
NFSAVGGDIR FGLGAIRNVG TGVVDSIVAT REAKGNYESF SDFLQKSELP VCNKRVIESL 
IKAGAFDSLK HSRKALCERH EVLVESIVGV KRKEAEGQFD LFGGMLTPDQ PDAATPGGDT 
DFSGDDWPRK TTLEFEREML GLYVSGHPLE GAEMILRKNS ENRIADLLTS DIPDGTSVTI 
AGIISSLERR VTKQGKPWAK ATVEDLDAAI ECLFFPKTYE FAGPQLAQDL VVAVRGKLNR 
RDGEISIVAM DLAPLEINES DLVNEPTLTL NVQLAKVNER VLDELKAVLQ GNRGDMAVRV 
KLCAPNAETL LALDERYKVA SGPGLTSELK SLLGAECLD