| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_3977 |
|---|
| Symbol | |
|---|
| ID | 8885178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | + |
|---|
| Start bp | 4244281 |
|---|
| End bp | 4247169 |
|---|
| Gene Length | 2889 bp |
|---|
| Protein Length | 962 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, SARP family |
|---|
| Protein accession | YP_003512722 |
|---|
| Protein GI | 291301444 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCTGT CAGTGCTCGG TCCGTTAACG GCCGACATCG ACGGGCAGGA CGTGCCGGTG
CCCGCGGGGA TGCAGCGGCT GCTGTTGGCG GCGCTGCTGC ACCGGGTGCG GCGGCCGGTG
TCCATCGACA CCCTGGCCGA GGCACTGTGG CCCGACGAGA CGCCCACCAA GCCGGACAAG
GCGATCCAGC TGTACGTCCA CCGGCTGCGC AAGCTCCTGG GTGACCCGGG CCGGATCATC
CACGGCCCGG CCGGGTACAG CCTCATCGCG TCGCGGTCCG AACTGGACTG GCAGTGTTTC
GAGGACCTGC TGCGCACCGC CCGCGAGGCG AGGCACGCGG GATCGTGGGA CACCGCCACC
CACCGGTACG TCGAAGCGTT GGCGCTGTGG CGATCCGACC CCTACGAGGA CGTGCCCGGC
TGCCACCTGC TGACCCCGGA GATCCAGCGC CTCACCAGTC TGCGGGTGGA GGCCCGGGTC
GAGCAGGCCG AGGTGATGGT CGACAGGGGA CGGCACGTCG AGGCCGAGCC GGTGATCTCG
CGGCTGCTGT CGGAGTTCCC GCACCGCGAG GGGCTGTACG CGCTGCTCAT GCTGGCGTAC
TACCGGGCCG GACGGGTCGG CGAGGCTCTG GACGTGTACC GCACGGCGCA GCGGCTGCTG
GCCGACGAGC TGGGCGTCGA TCCCGGACCG AAGCTCAACA CGGTGCACCG CGCGATCCTC
AACCGCAGCC CGGGGCTGGA CGGCACCGCC GCCGCCCCCG CGTCGCCGGT CCCGGCGCAG
CTTCCGGCGC CGATCTCGGC GCTGGCCGGT CGCGAAGCCG AGATCGAGGA ACTGACCCGC
GCCGATACCC CGGGCCGCCG CGGCCTGGTG CGCGCCGTCG ACGGCATGGC GGGCGTCGGG
AAGTCCACAC TGGCCATCGC CGCCGCGCAC CGGCTCGCGC CCCGGTACCC GGACGGCCAG
CTGTTCGCCG ACCTGCGCGG CTTCACCCCC GGCGTGGAAC CCAGCCAGCC CGGCGAGGTC
CTGGGGCGGC TGCTGGAAGG GCTCGGCGTC ACCGGCGACC GGCTGCCCCA CGACACCGAG
GCACGCGCGG GCCTGTGGCG GGGCATGTCG CGCGGCAAGC GGATCCTGTT GCTGCTGGAC
AACGCGGTGG ACGCGAACCA GTTGCGGCCG TTGCTGCCCG CCGATCCCGG CTGTCTGGCC
ATCGTCACCA GCCGCCGTCG GCTCACCGAT CTCGACGACG TTCGCAACCT CACCCTCGAC
GTCCTGCCCA AGCCTGCCGC CGTGCAGCTG TTCACCAACG TGGTCGGCGC ATCCCGGCTG
AGCGACCAGG AGGCACTGGA CGAGGTGCTG GCCAGCTGCG GCGGCCTGCC GTTGGCGTTG
CGGCTGACGG CGTCCCGCTT CCGTGACCGG CCATCATGGA CGCTGTCGCA GTTGGCCGAA
CGGCTGCGTC GCGACCGCCC CGAGGTGCTC TCCAGCGACG GTGTCGCCAG TGCCTTCGGC
ATCGCCTACG AACGGCTCAG CGACGAGCGG CGGCGGCTGT TTCGGCGGCT CAGCCTCCAT
CCCGGTGTCG ACATCGGATC CGCTGCCGCC GCCGCGCTGG CGGAATCCGG CGACGCCGAG
AACGAGCTGG AAGCGTTGGT GGACACGCAT CTGCTGCTGT CACCGGACTT CGGCCGCTAC
CGGTTCCACG ACCTGATGCG CCGCTATGCC GAATCGCTGG TCACCGACAC CGAACCGGCC
GCCGACCGCG AGGCGGCTTT GCGTCGGCTG ACCGACCACT ATCTGGGCTC GACCCGAAAC
GCCGTCGAAG CAGCGGGTCT GGCCCCGGCG CTGCCCACTA CCGGGCTGGC CAGCGGGAGC
GGCGCGGCCG ACCCCGGTGA GCCGTCCGGA CACGCCGAGG CCGAGACCTT CCCCGACGCC
GCCTCGGCAC TGTCCTGGCT GGACACCGAA CGCGCCAACC TCGTCGCCGT CACCCGTCGC
GCCGCCGAGC ACGGCTGGAC CGACCACGTC GTGGCCCTCG CGACGCTTTT GGCCCGGTAC
CTGTCGGCCG GAACGCATGC GGGCGAGGAA CTGACCGTGC ACCGACTCGC CGCCCGCATG
GCCGCCGAAC GCGGCGACAC CCCCGCCCAG GCCATCGCCT GGCACCACCT CGGCGGCACC
TACCTGGCGC TGGGCCAACG CGACAAGGCA CTGGCCTACT ACGGCGAGGC CCTCGTCGTG
TTCCAGGAGA CCGGCGACGA CCGCGCCGAG GCCGTCGCCC GCCACGCCGT CGCCAACGCC
CTCGACATGG GCGACCAGCT CGTCGAGTCG CTGGAACACC GCGAACGGGC ACTGGAACTG
GCCACCAAGA CCGCCGACGC CGTCGGACAG TGCCGCGCCC ACCTGGGGCT GGCGATCTCA
CTGCGCAGGC TCGGCCGATA CCCGGCCTCC GGCGAGCATT GCCAACGCGC CCTTGACATC
GCCGTCGAAG CCGGACACCA CGCCTACCAC GCCGCCGCGC ACGAGCACCT CGGCCACCTC
CGGCTGGCCT GCCGCGAGTA CCCGGCGGCC GTCGAGGCGT TCGAACAGGC CCTGGACCGG
TACCGCGACT CCGGCAACCG GCGCGGCGAA TACCAGTCGC TCAACGGATT GGGCCGATCC
CTGTGCGCGC TCGGCGAGAT CGACGCCGCC CTGGAGCACC AGCGGCAGGC CATGGACATC
GTGCGCGACA CCGACGATCC CAACGCCAAA CTGGAGGGTC ACCTGTGGCT CGGCGAGGCG
CTGGCCGCCG CCGGGCAACC GCGCGACGCC CGCCGCCACC TCGACACCGC CCTGGAGCTG
GCCGCGAAAC TCGGCCAGCC GGAGGACGAA CGACAGTGCC GGGCGCTGCT GGCGACACTG
GATCGCTAG
|
|---|
| Protein sequence | MFLSVLGPLT ADIDGQDVPV PAGMQRLLLA ALLHRVRRPV SIDTLAEALW PDETPTKPDK
AIQLYVHRLR KLLGDPGRII HGPAGYSLIA SRSELDWQCF EDLLRTAREA RHAGSWDTAT
HRYVEALALW RSDPYEDVPG CHLLTPEIQR LTSLRVEARV EQAEVMVDRG RHVEAEPVIS
RLLSEFPHRE GLYALLMLAY YRAGRVGEAL DVYRTAQRLL ADELGVDPGP KLNTVHRAIL
NRSPGLDGTA AAPASPVPAQ LPAPISALAG REAEIEELTR ADTPGRRGLV RAVDGMAGVG
KSTLAIAAAH RLAPRYPDGQ LFADLRGFTP GVEPSQPGEV LGRLLEGLGV TGDRLPHDTE
ARAGLWRGMS RGKRILLLLD NAVDANQLRP LLPADPGCLA IVTSRRRLTD LDDVRNLTLD
VLPKPAAVQL FTNVVGASRL SDQEALDEVL ASCGGLPLAL RLTASRFRDR PSWTLSQLAE
RLRRDRPEVL SSDGVASAFG IAYERLSDER RRLFRRLSLH PGVDIGSAAA AALAESGDAE
NELEALVDTH LLLSPDFGRY RFHDLMRRYA ESLVTDTEPA ADREAALRRL TDHYLGSTRN
AVEAAGLAPA LPTTGLASGS GAADPGEPSG HAEAETFPDA ASALSWLDTE RANLVAVTRR
AAEHGWTDHV VALATLLARY LSAGTHAGEE LTVHRLAARM AAERGDTPAQ AIAWHHLGGT
YLALGQRDKA LAYYGEALVV FQETGDDRAE AVARHAVANA LDMGDQLVES LEHRERALEL
ATKTADAVGQ CRAHLGLAIS LRRLGRYPAS GEHCQRALDI AVEAGHHAYH AAAHEHLGHL
RLACREYPAA VEAFEQALDR YRDSGNRRGE YQSLNGLGRS LCALGEIDAA LEHQRQAMDI
VRDTDDPNAK LEGHLWLGEA LAAAGQPRDA RRHLDTALEL AAKLGQPEDE RQCRALLATL
DR
|
|---|
| |