| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_3692 |
|---|
| Symbol | |
|---|
| ID | 8884891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | - |
|---|
| Start bp | 3927052 |
|---|
| End bp | 3929496 |
|---|
| Gene Length | 2445 bp |
|---|
| Protein Length | 814 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | |
|---|
| Product | putative sensor with HAMP domain-containing protein |
|---|
| Protein accession | YP_003512442 |
|---|
| Protein GI | 291301164 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.22058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.92604 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAATAT TGAAAATCAG GCACAAGATC ACGTTCTTGG TGGTTGTACC GCTGTTGGCG
GTCTTCGTGT TCGCCGCGTT GGCGGTCGTG ACCACCGGCG GCGAAGCCGT TCGCGCCGAT
CAACTTCGCA AGATGGTGAT CATCAACGAC GAGATCGGTG ACCTGGTGAG TGCCCTGCAG
GCCGAACGTG GGGCCGCCGT GGAGACCCTG ACCGGCGACG CCGATGACTC GACGGGCAGC
TTCACGCGTC TGGTGGACAA GACTGACAGG GCGATCGACG ACTTTCGCGC GGCCCGGGTG
GGTGTGGCCG ATCTTCCCGG TCGAGTCGGC GACATTCTCG ACGAAGCCGA TAAGAATCTG
AACCGGCTGG AATCCACTCG CAACAAAGTT TCCAACAGGA CGCAGACTTC CGCCGCCGTC
GCATTCGCCT ATCGCATTCC CATCGCCGAT CTGATCGAGT TTCGCGAATC CGTTCCGCAA
GCCGGTAGCG CTTCTTCTGA AGTGGGGGAC AAGATCCGTG CCTCCACGCA ACTACTTCAG
TCCAGTGAGT ACCAAAGCCT GGAAGACGTG GCGGTCCTGC GGGCCATTGA CAATGGACCG
TTGTCGGAGC TCCACTACGG TCAGATAGTC GAATCCGGGT CCGCCAGCGA CGAGATGCGG
CTGACGTTCA AGGACCTGGC CGACAGCGAA TGGCGCGGCT GGCTGGAGAA CTCCCGTGAC
GGGGCCAAGA TGATCGCGGC CCAGGCGCTG GAGCACGAGG CCGCCGGTAC CCCGCCCGGG
GAAGAGCTCA ACATCGACCG TTCTGCCTGG GTGAAACGGA TCGACTACCT GGCCGGTAAA
CAGCGCGAAC TACAGGGCCG TGTCGACGGC GATGTCGTGA CCACGGTGTC GCAACTGCGC
ACCGATCAGA TGTGGTGGAC CGGCGCCCAG GTTCTCGGCG TGGTCGTGGC CGTGATCCTG
ATGGTGCTGT TGGCGTGGTG GCTGGGCGGT CCGGTGGTGC GCGGGCTGCG CAAGCTCAGC
AAGGCCGCGC ACTATGTGGC CAGTGAGGGG CTGCCGAAAG CGGTGGCCCA CCTGGACGAT
CACGAGGAAC TGGGTGACCG TACGCCCGAG GAGTTCGCCA AGGAGGTCGA CGCACCGATC
GACGTCCACG GTCGTGACGA GCTCGCCGAC GTGGGGCGCG CGTTCAACGA GGTGCACGAG
GTGGCCATCC GCGTCGCCGC CACCCAGGCG CTGCTGCGGC TGCACATCGG GCAGATGTTC
GTCCGGCTGG CGCGGCGGGG ACATTCGCTG GCGGGGCGGT TGACGAGCGT CCTGGACGAC
GCCGAGCGCA ATGAGGACGA TCCACAGCGG TTGGAACGGC TGTTCGCGCT CGACCACCTG
GTGACGTTGT TCGGGCGCGC CAACGACAGC CTGCTGGTGC TGGGTGGGGC CGCCTCGTCG
AAGGTGCGCC GCTCCAGCGA GTCGCTGGGG GATGTGCTGA CCGCGGCGCA GGGGCAGATC
GAGCAGTACA CGCGCGTCAA CATCGACCAG GTCGACACCG ACGTCGCGAT CGCGGCCGGT
GCCGTGGACG ATGTGGTCAA GGTGCTGGCG GAGCTGCTGG ACAACGCGAC CCAGTACTCG
CAGCGGCCGG TCCACATGTC GGGTTGGATG CTGGCCGACC GGGTGATCAT CCAGATCGTC
GACGAGGGCA TCGGCATGAA GGCCGAGACC ATGGACAAGC TGAACGCGAA ACTCGCGTCC
AAGAGCACAT TGGACCTCGA TTCGGTCCAG GCCATGGGGC TCACCGTGGT GGGGCACCTG
GCCGCGCGCT ACGACCTGAC GGTGACGTTG CGCCCCACGG AGGTGGGCGG CACGCTGGCC
GAGGTCACGG TGCCCAGTCG GCTGCTGGAG CGTCCCTCCA CGACCGGTTC CCACCCGATC
GTCACCACAC CGAAACAACC GTCCCTGTTC GACAAGACCA AGAAGGCGGA GAACCGGCGA
CGCAACGCGG AGACCTGGCG CCGACGCTTC CAGACGGGTA CGCCCTCACC GACCGCCGAA
CAACCGGTCG TCACCACCGA AACCGGGGAA TCCACCCAGC AGTCACTGGG AGCGCTGCTG
CTTCCAGTGA TCCACTTCGA CAAGCAACCG CCGCCACCCC AACCACCGCG GCAGTCGCGA
CCGGACAGTG TGCCTCAGGA GCAGATCGTG GAGCAGTCGG GATGGGCCAG AGCCCAAGCC
GCCGCCGAAG CCGCCGCCGC GGCCCGGGCC GACAGCGAGA ATCTGCCCAG ACGGGAACCG
ATGGCGCAGC TCGTGCCCGG GGGCATGGAG GCCCCCGACG AAGACGTCGC ACAGACAGTG
CGGAACCCGG ATTTGGTGAG CGCCACGTAC CTGGCCTTCG CCCGGGGCCG CTCCGGTGGT
CGGATCGACG AAGACGCATC CGACGGTTCA AGGGGTGAAC AGTGA
|
|---|
| Protein sequence | MTILKIRHKI TFLVVVPLLA VFVFAALAVV TTGGEAVRAD QLRKMVIIND EIGDLVSALQ
AERGAAVETL TGDADDSTGS FTRLVDKTDR AIDDFRAARV GVADLPGRVG DILDEADKNL
NRLESTRNKV SNRTQTSAAV AFAYRIPIAD LIEFRESVPQ AGSASSEVGD KIRASTQLLQ
SSEYQSLEDV AVLRAIDNGP LSELHYGQIV ESGSASDEMR LTFKDLADSE WRGWLENSRD
GAKMIAAQAL EHEAAGTPPG EELNIDRSAW VKRIDYLAGK QRELQGRVDG DVVTTVSQLR
TDQMWWTGAQ VLGVVVAVIL MVLLAWWLGG PVVRGLRKLS KAAHYVASEG LPKAVAHLDD
HEELGDRTPE EFAKEVDAPI DVHGRDELAD VGRAFNEVHE VAIRVAATQA LLRLHIGQMF
VRLARRGHSL AGRLTSVLDD AERNEDDPQR LERLFALDHL VTLFGRANDS LLVLGGAASS
KVRRSSESLG DVLTAAQGQI EQYTRVNIDQ VDTDVAIAAG AVDDVVKVLA ELLDNATQYS
QRPVHMSGWM LADRVIIQIV DEGIGMKAET MDKLNAKLAS KSTLDLDSVQ AMGLTVVGHL
AARYDLTVTL RPTEVGGTLA EVTVPSRLLE RPSTTGSHPI VTTPKQPSLF DKTKKAENRR
RNAETWRRRF QTGTPSPTAE QPVVTTETGE STQQSLGALL LPVIHFDKQP PPPQPPRQSR
PDSVPQEQIV EQSGWARAQA AAEAAAAARA DSENLPRREP MAQLVPGGME APDEDVAQTV
RNPDLVSATY LAFARGRSGG RIDEDASDGS RGEQ
|
|---|
| |