| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_1967 |
|---|
| Symbol | |
|---|
| ID | 8883159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | + |
|---|
| Start bp | 2085936 |
|---|
| End bp | 2087552 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | |
|---|
| Product | 2-isopropylmalate synthase/homocitrate synthase family protein |
|---|
| Protein accession | YP_003510756 |
|---|
| Protein GI | 291299478 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.153621 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA CGAATCCCGA CGAGTTCCAC GTTTTCGACA CCACGCTGCG CGACGGGGCG
CAGCGTGAGG GCATCAGCTA CTCGGTGGCC GACAAACTCG CGGTCACCAA GCTGCTGGAC
GAACTGGGGG TGGGCTTCAT CGAGGGTGGC TGGCCCGGGG CCCTGCCCTC CGACACCGAG
TTCTTCGCCC GCGCCGCCGA GGAACTGACC CTCAAGCACG CCACGCTGGT GGCCTTCGGC
GCCACCCGCA AGGCCGGACT CGCCGTCGAG GACGACCCGC AGGTGGCGGC GTTGCTCGAC
TCGCGCGCCT CGGCGTGGTG CCTGGTCGCC AAGTCCGACG TGCGGCACGT GAAGCGGGCA
CTGCGCACCA GCCCGGAGGA GAACCTGGCG ATGGTGGCCG ACACCGTCGC CTATGGAGTC
TCGTGTGGAC GGCGGGTGTT CCTCGACTGC GAGCACTTCT TCGACGGCTT CGCCACCGAC
CCCGACTACG CCACCGCCGT GGTGCGCACC GCGCTGGACG CCGGAGCCGA CGTCGTGGTC
CTGTGCGACA CCAACGGCGG CATGCTGCCG TCGGGGATCT CGCGCACCAT CACCGAACTG
CGCGAACGCC TGGGCGGCAA CCCCCGCCTG GGCATCCACT GCCAGGACGA CACCGCCTGC
GCCGTGGCCA ACACCATCAC CGCCGTCGAG GCCGGGGTCA TGCACGTACA GGGCACCGCC
AACGGCTACG GCGAGCGCCC CGGCAACGCC GACCTGTTCG CCGTCGTCGG CAACCTCGCC
ACCAAGATGG GCATGGACGT GCTTCCCGAC GGCGGCCTGG CCAAGCTCAC CCACGTGTCG
CACGCGATCG CCGAACTGGC CAACCTCGCT CCCGACTCGC ACCAGGCCTA CGTCGGTCAC
GCCGCCTTCG CCCACAAGGC CGGACTGCAC GCCAGCGCCA TCAAAGTGGA CCCACAGCTG
TACAACCACA TAGATCCGTC CGTTGTGGGC AACGACATGC GGATCCTGGT CACCGAGATG
GCCGGACGGG CCAGCATCGA ACTCAAGGCC AAGGAACTGG GCCTGGACCT GTCGGGCCAC
CCCGAGACCC TCAACCGGGT CACCAAACGG GTCAAGGACC TCGAGGCGCG CGGCTGGAGC
TTCGAGGCCG CCGACGCGTC CTTCGAACTG CTGGTGCGCG ACGAACTGGC CACCGGCCTG
ACCCGCCACT TCCGGCTGGA CAGCTACCGG GTCATCGTCG AACACCGCGG CGACGGCGCG
GTCGTCAGCG AGGCGACGGT CAAGGTGCGC AGCCGCGGCG AACGCGTCAT CGCCACCGCC
GAGGGCAACG GTCCCGTCAA CGCCCTGGAC TCGGCGCTGC GCAAGGCACT CGTCGCCCAC
TATCCACAGT TGAACGACGT TTCGCTGGCC GACTACAAGG TCCGGATCCT GGCCGGATCC
AGCGGCACCG ACGCCATCAC CCGGGTGCTG GTGGGCACCA CCGACGGCGA ACGCGAGTGG
ACCACCGTCG GCGTCCACGA CAACGTCGTC GAGGCCAGCT GGCACGCGCT TTCGGAGGCA
CTGGCGTATC GCCTGTCGCG GTTACCACGG CTACCGCGTG TGTCCCGATA TCGTTGA
|
|---|
| Protein sequence | MTTTNPDEFH VFDTTLRDGA QREGISYSVA DKLAVTKLLD ELGVGFIEGG WPGALPSDTE
FFARAAEELT LKHATLVAFG ATRKAGLAVE DDPQVAALLD SRASAWCLVA KSDVRHVKRA
LRTSPEENLA MVADTVAYGV SCGRRVFLDC EHFFDGFATD PDYATAVVRT ALDAGADVVV
LCDTNGGMLP SGISRTITEL RERLGGNPRL GIHCQDDTAC AVANTITAVE AGVMHVQGTA
NGYGERPGNA DLFAVVGNLA TKMGMDVLPD GGLAKLTHVS HAIAELANLA PDSHQAYVGH
AAFAHKAGLH ASAIKVDPQL YNHIDPSVVG NDMRILVTEM AGRASIELKA KELGLDLSGH
PETLNRVTKR VKDLEARGWS FEAADASFEL LVRDELATGL TRHFRLDSYR VIVEHRGDGA
VVSEATVKVR SRGERVIATA EGNGPVNALD SALRKALVAH YPQLNDVSLA DYKVRILAGS
SGTDAITRVL VGTTDGEREW TTVGVHDNVV EASWHALSEA LAYRLSRLPR LPRVSRYR
|
|---|
| |