Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6240 |
Symbol | |
ID | 5320542 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 1161490 |
End bp | 1162617 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640777842 |
Product | integrase catalytic region |
Protein accession | YP_001314774 |
Protein GI | 150378179 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTAGGGC CCGCCGCCAA GCGTGAAGCC GTCGCGCATC TGAAGGCCGT CATGGGCCTC TCGGAGCGGC GGGCCTGCCA GATCATCTCC GCTGACCGGA AGATGGTGCG CTATCGGTCA CGCCGACCGT CAGAGGCCGA ACTGCGGAAG AAGCTTCGCG ACCTCGCCAA CGAGCGACGG CGTTTCGGCT ACCGGCGACT GTTCGTCCTG CTCAGGCGGG AGGGAGAGCC GTCCGGCGTC AACCGCATCT ATCGGCTGTA TCGCGAGGAA GGGCTTTCGG TTCGCAAGCG GAAAGCCAGG CGGCGTGCCG TCGGCACGCG TGCGCCGATA CTGGTCGAAG CGAAGGCCAA TGCCCGCTGG TCGCTGGATT TCGTCCATGA TCAGTTCGCC TGCGGAAGAA GATTTCGCGT GCTCAACATC GTCGATGACG TGACGCGCGA ATGCCTGGCA GCGATCCCCG ACACCTCGAT CTCCGGCCGT CGTGTTGCTC GCGAATTGAC GGCGCTCCTC GAGCGGCGCG GCAAGCCCGG CATGATTGTC TCCGACCATG GCACGGAATT CACGTCGAAC GCGATCCTCG CCTGGTCAAA GGAGCACAAG GTCGAGTGGC ACTACATCGC ACCAGGAAAG CCGATGCAGA ACGGTTATAT CGAGTCTTTC AACGGGCGGA TGCGCGACGA GCTGCTGAAC GAAAGCCTGT TCTTCGGTCT CGATCATGCC CGCAGCGCCA TCGCCGAATG GGCAGACGAT TATAACCATT CCCGGCCGCA CTCATCGCTC GGATATCAGA CCCCGGCACG CTATGCCGGA ACCATCGCCG CAACCGGCTT CAACGCTGTG CAAGATGAAG GCTACGCGTT TCCGCCGGTT GCTCCCACCG CGCCAAGTGG CGTAATGAAA ACCGCCGAGG CTCTCTTATG TTCATTTGCA AGCTCCTTAA TCATGACTCT TTCCTTTCCG GCCTTGAGGA CGAAAGCACG CATGCGTGAA GCTGTTGAAC AAAGGAGGAG GCAGGGCATT TTGACGACGG CTGGCATACT CTTATGCGCG GGTTGGGTAC CGCATTTCCG TGTATTCGTC TGGGGCTGCC TCTGTCTAAT CTCGGGCTTG GATTTGTCCG CCACATAG
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Protein sequence | MVGPAAKREA VAHLKAVMGL SERRACQIIS ADRKMVRYRS RRPSEAELRK KLRDLANERR RFGYRRLFVL LRREGEPSGV NRIYRLYREE GLSVRKRKAR RRAVGTRAPI LVEAKANARW SLDFVHDQFA CGRRFRVLNI VDDVTRECLA AIPDTSISGR RVARELTALL ERRGKPGMIV SDHGTEFTSN AILAWSKEHK VEWHYIAPGK PMQNGYIESF NGRMRDELLN ESLFFGLDHA RSAIAEWADD YNHSRPHSSL GYQTPARYAG TIAATGFNAV QDEGYAFPPV APTAPSGVMK TAEALLCSFA SSLIMTLSFP ALRTKARMRE AVEQRRRQGI LTTAGILLCA GWVPHFRVFV WGCLCLISGL DLSAT
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