| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6138 |
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| Symbol | |
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| ID | 5320440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 1062554 |
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| End bp | 1064209 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640777769 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001314701 |
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| Protein GI | 150378106 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAGT TCGATGCAGT TTTTAGTTTG CCTTTGATGG AAGCCGACGA GCTCAGTTCC
TTCTATGAGA ATACCAATCT TATCGGCTGT TCCGCAGCAC TCGGGCGAAA ATATCAGATC
TCCGCATCGT CGCAGGCGAC CATCGGGAGT GTATATCCGG AGCTCCTGGG TTCTCACCAT
AAGCTGGTCG TGGAATCGGT GCTTGTCACC GGTTTTCCGC GAAGCATCGT CATCCCCCCT
GCTCGGAAGC TGTTTATCTG CCGCATTAAA TCTGGCCTCC TCGGGATCTT CGAGACGGGG
GAAGTCGCAG TTTCCCCGTC CTCCCTAGAA CTCGAGGGCG ACGAACGCGT TCTCCTTCGC
CACCAGGCGT TGCATGACGT GTTGACCGGG TTACCTAATC GCCGGCAATT TAGCGACGAC
TTGGACGCCC GTCTTCCAGT CGAGGGCGTG GAAAGAATTG CTCTGATGCA AATCGACCTC
GACGACTTCA AACCCGTCAA CGGTACGCTC GGGCATGCTG CCGGTGATCT CGTACTTCAG
GGTACCGCCG AGCGACTTCA GGCCATGCTT GGCGAAGGAG GCATCGCTTA TCGGCTTGCC
GGTGATGAAT TTGCCGTTCT CCAGCGTAGT GGGCGGTCGA TGGAAGCTAA ACGTCTCGCC
GAGTCGATCG TGAATGCTTT CAAAGAGCCG TTCACCGTGG AAGGTATCGA TGTGTTCGTC
GGAGCGAGCG TCGGGATCGC GATCGCGCCC GACGACGGAA ACGATGGCGA GCAACTGATG
AAGGCTGCGG ACATCGCGCT TTATGCCGCC AAGAACGATG GGCGCGGGCG AGCCAGAAGC
TTCAATCGCT CCATGCTCAT CATGTTGGAA CAGCGCGAGA TGCTAAGGCG CGGTCTGCGT
GTCGCCCTGC AGGAACGGCA ATTCTTCCTC GAATACCAAC CGCTCATAGA AACCGATGCG
ATCGTTGGCT TCGAAGCCCT GCTGCGGTGG CAACATCCCT ATGCTGGGAT CGTGCCGCCG
GCCGTGTTCA TTCCCTTGGC GGAAGCAGAC GGCCTGATGG TAGAGATCGG CGAATGGGTG
CTAGAGCAAG CCTGCCGACA AGCGGTGAAT TGGCCCGAGC ACTTCACAGT TGCGGTCAAT
CTCTCGCCGG CCGAATTCCT CCGCAAAGGG CTCACCGACC GTGTGGCCAA TACCCTGGAT
TCTGCGGGTC TGTCCGCAGA ACGCCTGGAG TTGGAAATCA CCGAGTCGGT ATTGCTCGAG
CGCACCGCCA ACAACCTCGA CACCCTCCAC ACGTTGGAGG TGATGGGTAT CCGCATCTCG
CTCGATGACT TCGGGACGCA ATATTCGTCC TTGGCGTACC TAAAGAACTT CCCGTTCGAC
ACGATCAAGA TCGACCGTTA CTTCATCAAG GACGTCGAGA CTGACGAGAA AAGCCAGGCG
ATCGTCCGCG CGATCGTCGC ACTTGCGCAC GGATTGGGAA TGCGGGTCAC AGCGGAAGGT
GTCGAGACCG CAGCTCAGGC GGCGTGGCTA CGCAAGCTAA GGTGCGACCG CTTGCAGGGA
AATTTGTTGG GCGCAGCCAC GCCCCCCGAT TCGATAAGAA ATTTCCTGCG ACAATCATCA
ATGGCAAGCC AACGGTCGGC TCTGGAAGAC TTTTAG
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| Protein sequence | MSEFDAVFSL PLMEADELSS FYENTNLIGC SAALGRKYQI SASSQATIGS VYPELLGSHH
KLVVESVLVT GFPRSIVIPP ARKLFICRIK SGLLGIFETG EVAVSPSSLE LEGDERVLLR
HQALHDVLTG LPNRRQFSDD LDARLPVEGV ERIALMQIDL DDFKPVNGTL GHAAGDLVLQ
GTAERLQAML GEGGIAYRLA GDEFAVLQRS GRSMEAKRLA ESIVNAFKEP FTVEGIDVFV
GASVGIAIAP DDGNDGEQLM KAADIALYAA KNDGRGRARS FNRSMLIMLE QREMLRRGLR
VALQERQFFL EYQPLIETDA IVGFEALLRW QHPYAGIVPP AVFIPLAEAD GLMVEIGEWV
LEQACRQAVN WPEHFTVAVN LSPAEFLRKG LTDRVANTLD SAGLSAERLE LEITESVLLE
RTANNLDTLH TLEVMGIRIS LDDFGTQYSS LAYLKNFPFD TIKIDRYFIK DVETDEKSQA
IVRAIVALAH GLGMRVTAEG VETAAQAAWL RKLRCDRLQG NLLGAATPPD SIRNFLRQSS
MASQRSALED F
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