Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5935 |
Symbol | |
ID | 5320237 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 897729 |
End bp | 899348 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640777628 |
Product | cbb3-type cytochrome c oxidase subunit I |
Protein accession | YP_001314560 |
Protein GI | 150377965 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.137652 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAGA CAGTCGAGAT GGTCGTACTT GCCGTCGGCG CCTTCCTGGC GCTGGTCGGA GCCGGTCTCG CCCAGGACCG CCTGTTCGGC GCGCACATGT GGATACTGTT CTTCGTGCTG CTCGGCGGCA CATTGGTGCT CATGCGCCGC GTTGATTTCC GTGCGGCTTC CGCGGGTCGC CGGGCCGGAG AGACGGAATA TTTCGACGAG GTCGTGAAGT ACGGCGTCAT CGCCACGGTA TTCTGGGGTG TGGTCGGTTT TCTCGTAGGC GTCGTCGTTG CCCTGCAACT TGCCTTCCCC GACCTCAATG TGGAGCCCTG GTTCAGCTTC GGCCGCATGC GGCCGCTCCA CACCTCGGCC GTGATCTTCG CGTTTGGCGG CAACGCATTG ATCGCGACGT CCTTCTATGT GGTTCAGCGC ACGAGTCGAG CGCGCCTCTT CGGCGGTGAT CTCGGCTGGT TCGTTTTCTG GGGTTATCAG CTTTTCATCG TGCTTGCAGC GACCGGCTAC CTGCTCGGAA TTACCCAGAG CCGCGAATAC GCGGAGCCGG AATGGTACGT CGATCTTTGG CTGACAATCG TATGGGTCGC TTATCTGGCC GTCTTCCTCG GCACGATCTT GAAGCGCAAA GAACCGCACA TCTACGTGGC GAACTGGTTC TATCTCGCCT TCATCGTCAC CATCGCGATG CTGCACATCG TCAACAACCT GGCGGTGCCG GTATCGTTCC TGGGTTCCAA GAGCTATTCG GCCTTCGCCG GCGTCCAGGA CGCGCTGACG CAATGGTGGT ACGGCCATAA CGCGGTCGGC TTCTTCCTGA CCGCCGGCTT TCTGGCAATG ATGTACTACT TCATCCCGAA ACAGGTAAAT CGCCCCGTCT ATTCCTACCG GCTGTCGATC ATCCACTTCT GGGCGCTGAT CTTCATGTAC ATCTGGGCAG GTCCCCACCA CCTGCACTAC ACGGCGCTGC CCGACTGGGC TCAGACGCTC GGCATGGTCT TCTCCATCAT GCTCTGGATG CCCTCCTGGG GCGGCATGAT CAACGGCTTG ATGACGCTCT CCGGTGCCTG GGACAAGATC CGTACGGATC CGGTCGTCCG CATGATGGTC ATGGCCGTCG CCTTCTACGG CATGGCGACC TTCGAGGGGC CGATGATGTC GATCAAGTCC GTCAATTCGC TGAGCCACTA TACCGACTGG ACCATCGGTC ACGTCCATTC CGGCGCGCTC GGATGGAACG GCCTCATCAC CTTCGGTGCC GTTTACTATC TGGTCCCGAA GCTCTGGAAC CGGGAGCGTC TTTACAGCCT GCAAATGGTC AATTGGCACT TTTGGCTCGC CACCCTCGGC ATCGTCGTCT ATGCCGCCAC AATGTGGGTA GCGGGCATCC AGCAGGGGCT GATGTGGCGC GAATACGATG ATCAGGGTTT CCTCGTCTAC TCCTTCGCGG AGTCGGTGGC GGCGATGTTC CCGTACTACG TCATGCGTGC CGCGGGCGGT GCCCTGTTCC TCGCCGGCGC GCTCGTAATG GCCTTCAACG TAACAATGAC CATCCTCGGC CGCATGCGCG ATGAGGCCGC GGCCATGGAT GCCGCGCCGC TGCCGGCACC GGCAGAATAG
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Protein sequence | MKQTVEMVVL AVGAFLALVG AGLAQDRLFG AHMWILFFVL LGGTLVLMRR VDFRAASAGR RAGETEYFDE VVKYGVIATV FWGVVGFLVG VVVALQLAFP DLNVEPWFSF GRMRPLHTSA VIFAFGGNAL IATSFYVVQR TSRARLFGGD LGWFVFWGYQ LFIVLAATGY LLGITQSREY AEPEWYVDLW LTIVWVAYLA VFLGTILKRK EPHIYVANWF YLAFIVTIAM LHIVNNLAVP VSFLGSKSYS AFAGVQDALT QWWYGHNAVG FFLTAGFLAM MYYFIPKQVN RPVYSYRLSI IHFWALIFMY IWAGPHHLHY TALPDWAQTL GMVFSIMLWM PSWGGMINGL MTLSGAWDKI RTDPVVRMMV MAVAFYGMAT FEGPMMSIKS VNSLSHYTDW TIGHVHSGAL GWNGLITFGA VYYLVPKLWN RERLYSLQMV NWHFWLATLG IVVYAATMWV AGIQQGLMWR EYDDQGFLVY SFAESVAAMF PYYVMRAAGG ALFLAGALVM AFNVTMTILG RMRDEAAAMD AAPLPAPAE
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