Gene Smed_5892 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5892 
Symbol 
ID5320194 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp857131 
End bp857853 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content63% 
IMG OID640777587 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001314519 
Protein GI150377924 
COG category[R] General function prediction only 
COG ID[COG4221] Short-chain alcohol dehydrogenase of unknown specificity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.197583 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.684579 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAAGG TCATTCTGAT CACCGGCGCA TCCAGTGGTA TCGGCGAGGG CATCGCCCGG 
GAGCTTGGCG CAGCCGGAGC GAGATTATTG TTGGGTGCGC GCCGCCTGGA CCGTATCGAG
GCCATTGCCG AAGACATCAG GAGCGCAGGC GGAACCGCCA GGGCGCAGAT ACTGGACGTG
ACCGATCGTC AGTCGATGGC AGCCTTTGCG AAGAGCGCAG TTGAGACATG GGGCCGCATC
GACGTTCTGG TGAACAATGC CGGCGTCATG CCGCTCTCGC CGCTTTCGGC CCTGAAGCTA
GACGAATGGG AGCACATGGT CGACGTGAAC ATCAAGGGCG TGCTTTGGGG CATCGGCGCG
GTGTTGCCGG TCATGACGGC ACAGCATAGC GGACAGATCA TCAACATCGG TTCCATCGGC
GCTCTGTCGG TCGTCCCCAC GGCCGCGGTC TATTGTGCGA CGAAGTTTGC CGTTCGCGCG
ATATCCGACG GGCTACGCCA GGAGAGCAGC AACATTCGCG TGACCTGTGT GAACCCCGGC
GTCGTCGAGA GCGAGCTTGC GCAAACCATC ACCCACGAAG ACACCATGGC AGCGATGGAC
GCCTATCGCG CCATCGCGTT ACAGCCGGCC GATATCGCGC GTGCGATCCG GCAGGTGATC
GAGGCTCCGG CGAGCGTCGA CACCAGCGAG ATCACGATCA GGCCGACCGC ATCGAGCAAC
TGA
 
Protein sequence
MDKVILITGA SSGIGEGIAR ELGAAGARLL LGARRLDRIE AIAEDIRSAG GTARAQILDV 
TDRQSMAAFA KSAVETWGRI DVLVNNAGVM PLSPLSALKL DEWEHMVDVN IKGVLWGIGA
VLPVMTAQHS GQIINIGSIG ALSVVPTAAV YCATKFAVRA ISDGLRQESS NIRVTCVNPG
VVESELAQTI THEDTMAAMD AYRAIALQPA DIARAIRQVI EAPASVDTSE ITIRPTASSN