| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5820 |
|---|
| Symbol | |
|---|
| ID | 5320122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 786761 |
|---|
| End bp | 787714 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640777516 |
|---|
| Product | beta-lactamase domain-containing protein |
|---|
| Protein accession | YP_001314448 |
|---|
| Protein GI | 150377853 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0920097 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGA TGATCAATAA CTCTCAGAAG GCAAACATAA ATCTGGACAC CACATCCCAA
ACGAGCAGAC CAGGAACAGA AGAACTGGTT CCGTCGCGCT ACGCGCTGCG GATCGGCGAG
ATTGATGTCC TGGTGGTCAG CGATGGAGTG CTACCGCTTC CAACCGAAAT GTTGGGACAC
AATGCCGCCT TGGCCGACCG GGAAACCTGG CTGGGCGACA TGTTCCTGTC GAAGGACGCT
TGCGATTGGG CGCTGAACGT AGTTGTGGTG CGCAGCGGAG CTCAGACCAT ACTCATCGAT
GCTGGACTAG GATTGGATCC CGACTTGAAC CTTCCGAAGG CCGGGCAATT GGTCAGGCGA
CTGGAGTCTG CTGGCATTGA TCTTGGTTCG GTGACCGATA TTGTGTTGAC CCATATGCAT
ATGGACCACG TTGGCGGGTT GATCGTTGGC GGAGTGAAGG AGCAGTTGCG GCCGGATCTA
AGGATTCACG TAGCCGCCGC CGAGGTCAAA TTCTGGGAAG CGCCCGATTT CTCTCGTGTG
CACATGCCGG CCGGCTTCCC GGACGCGCTT CGGGCTGCCG CCAAGCGGTT CGCGGAAGAA
TATCGCGGCA ATTTGCGCCT GTTCGATGAG GAATACGAGG TAGCGCCGGG AGTGGTCGTT
ACCCGCACCG GCGGCCACAC CCCCGGCCAC AGTATCGTGC GTCTGACGTC GGGCAGCGAC
CGATTGATGT TCGCCGGTGA CGCCGTGTTC ACGGTCGGCT TCGACCACCC CGACTGGCAC
AATGGTTTCG AACACGACCC GGAGGAGGCT GCCCGCGTTC GGGTTCGGCT CTTGAAGGAG
CTGGCAGCGA CCGGCGAACT GCTGGTGGCC ACGCATATGC CATTCCCGTC CACGGGCCAC
GTCGCGGTCG AAGGTGACGC CTTTCGTTGG GTACCAATTG CCTGGGACTA CTAA
|
|---|
| Protein sequence | MNQMINNSQK ANINLDTTSQ TSRPGTEELV PSRYALRIGE IDVLVVSDGV LPLPTEMLGH
NAALADRETW LGDMFLSKDA CDWALNVVVV RSGAQTILID AGLGLDPDLN LPKAGQLVRR
LESAGIDLGS VTDIVLTHMH MDHVGGLIVG GVKEQLRPDL RIHVAAAEVK FWEAPDFSRV
HMPAGFPDAL RAAAKRFAEE YRGNLRLFDE EYEVAPGVVV TRTGGHTPGH SIVRLTSGSD
RLMFAGDAVF TVGFDHPDWH NGFEHDPEEA ARVRVRLLKE LAATGELLVA THMPFPSTGH
VAVEGDAFRW VPIAWDY
|
|---|
| |