Gene Smed_5781 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5781 
Symbol 
ID5320083 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp754896 
End bp755627 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content57% 
IMG OID640777488 
Productresponse regulator receiver protein 
Protein accessionYP_001314420 
Protein GI150377825 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.305702 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00700374 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTCAACC ACCGTAGACT GTCAGCGTCG TTAAGGACGC TTCAGGCAGC GAAGCATCGC 
GCGGACCTTC AGTCCGCATT GGGCGAACTT TGCGAGCACT ACGGCGTGTC GCACATGACA
ATTCTTGTGG TTTGCAGCGG TGGCAGATCG GGCTCGTACC CCTATTGTTG CACGACGTAT
CCGGAACGGT GGACGGAAAA ATACGTCGGC AAGTGCTTTT TCGAAATAGA CCCGGTGATC
GACGTGATTC GGTGGGGGTT CCTCCCGGTG GACTGGTCCT CTCTCGATCG GCGATCAGAA
CAGGCCCACC GCTTGTTTAA GGAAGCTCGT TTGTACGATA TCGGCCCTCA TGGCCTGACG
ATCCCAATCC GGGGTCCTAA AGGCGAACGA TGTCTCCTCT CCGTGACGTC GAACCTACCC
GGGCGCCATT GGTCACGGCT ACGCGCTTCG AGTATTCACG AACTTCAGAT CCTTTCCCAC
TATCTTCATG AGACCGTGCT TTCTGCCAGC GGTCTGCGAG GGACCGACCG TTATCGGAAC
CTCTCCAGGC GCGAAAGTCA GTGCTTCCAG TTGCTTGCAA CAGGTCGGAT TTCTAAGCAG
ATAGCAGCGG ACCTCGGCAT CTCGGAGAAC GCCGTGAAAT TGTACCTGCG TTCGGCAAGG
ATGAAGCTGG GAGCTGCTAC AAGTCATCAG GCCGTTGCCC GGGCGAGCTT CCTCGAGTTG
ATCAAGATCT GA
 
Protein sequence
MVNHRRLSAS LRTLQAAKHR ADLQSALGEL CEHYGVSHMT ILVVCSGGRS GSYPYCCTTY 
PERWTEKYVG KCFFEIDPVI DVIRWGFLPV DWSSLDRRSE QAHRLFKEAR LYDIGPHGLT
IPIRGPKGER CLLSVTSNLP GRHWSRLRAS SIHELQILSH YLHETVLSAS GLRGTDRYRN
LSRRESQCFQ LLATGRISKQ IAADLGISEN AVKLYLRSAR MKLGAATSHQ AVARASFLEL
IKI