| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5672 |
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| Symbol | |
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| ID | 5319974 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 638138 |
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| End bp | 640195 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640777403 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001314335 |
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| Protein GI | 150377740 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGACCG TAATGAGCTG CATCACAAAC GAACACAACC TGCTATTGGT CTCCGTGGCG
GCGCTAATTT GTCTTTTTGG CTCGGCAATA ACTCTGAGAC TGCTGAACCG TGCGGTAAGC
GCCTCTGGTG GGCAGAGGTT CGGCTGGCAG TTTCTAGCGG CGGTCGCTGG CGGTGGCGGC
GTATGGACAA CCCACTTCGT CGCCATGCTG GCATACGAAC CTTCCGCGCC CGTTTCATTC
GATCCAGTTA TGACTTTGCT GTCATTGGTG ATCGCCATGG GTGGCCTCGT TGCCAGTTTC
TCCATCAGTG GCATAAGAGC GAACCGCATG TTCGCCCCGC TTGGAGGCGC TGTGGTCGGG
CTGTCGTATT CAGCAATGCA CTACACCGGA ATGTTCGCCT TTAGTGTCAT GGGGTTGATT
GAATGGCAGC TTGGTTACGT CGTCGCTTCG ATACTGCTCC CGGTGGTATG TTCAGCAGTG
GCGGTAGCCC TGGTGTCGCG GCCGGATCTG CGGGCGCAAC GTTTCTGGAT GGCCGTGACG
CTCTTTGTCA TGGGCATCGT GGGTCTGCAT TTTACCGGAA TGGCGGCGTA TCGTATCACG
CCCCTGACAA GCAATTTTCC TGAGGTCTCC CCGGCCGCCG CTCTCGCCCT CGGCCTCGCT
ATTGCGATTG TGGCTCTGAT CGTCGTCGGT GCCGGTATGG CGAGCTATCT AATCGACACC
GATGTTCGCG CACACTCGCA GCAACAGCTT CGTTACATGG CCGCCCACGA CGCACTCACC
GGTCTGCCCA ATCGCATCAG CTTTACAGAC CGACTGATTG AGGTTCTTCA TGAAGCTCGA
GGGTCCGGCC GCAAGTTCGC GGTCATTGGC ATCGACCTCA ATCGCTTTAA GGAAATCAAC
GACACGCTCG GGCACAGCGC GGGCGATGAA GCGCTTCGCA TCGTCTCGCG TCGCATGGCG
CAATCCCTCG ATAGCGACGA GTTTGTGGCG CGCTTGGGCG GCGACGAGTT CGCAGCAGTG
AAGACATGTG TAACAAAGAA AGAAGTCTCC GCATTTGCCG ACCGGCTTGC GGAGATTTTC
GGCCGGCCCA TCCGTGTTGG CAACATAGAG GTGACGGTAG GTGCAAGCAT GGGAGCTGCC
ATCTGGCCGG ACGATGCCGA AGCTCCCGAC GAGCTGGTCA ACAATGCTGA TCTCGCTATG
TATCACGCAA AGCACACCTT TCTGGACGTG CCATGCTTCT ATGACTCGGG GATCGGCGCG
TCCGTGCGCA AACGACGGCA GCTGGGCGAG GCACTGCGGC ACGCGCTGGA GCAGGACGAG
CTCGCCATTC ACTACCAGGT GCAGAAGTCC CTCTCAACCG GCGAAGTCCA GGGCTACGAA
GCGCTTTTGC GCTGGACCCA TCCGCAGCTC GGGCCCATTC CGCCATCCGA GTTCATTCCG
ATTGCCGAGG AGAATGGATT GGTTCGGTCC CTCGGGGTCT GGGTACTTCG CCGGGCCTGC
ATGGACGCTG TAACGTGGGA TAAGCCTTGC CGTGTGGCCG TTAATGTCTC AGCCGTCCAA
TTCATGGATG CCAATTTGCC TCGGCTGGTA CATGAGGTTC TGATTGAAAC CGGCTTGCCT
CCCCAGCGGC TGGAACTGGA GCTTACCGAA ACCGCATTGA TAAAGGACAA GGGTCGCTCG
CTGCATATCA TCGGCCAGAT CAAAGCACTG GGGGTCGGCT TGGCCCTGGA CGACTTCGGA
AGCGGCTATT CTTCGCTCGA AACATTGCGA TCTTTTCCCT TCGACAAGAT CAAGCTCGAC
CGAGCCTTTG TTGACGGCAT TGAATCAGAC CGCCAGTCCA AGGCTATCGT AAGAGCAGTG
CTAGCCCTCG GCAAAAGCTT GGATATTCCC GTCCTAGCCG AGGGTATAGA GACCGACGAG
CAGATGTCGG TTTTGCGCTT GGAAGGATGC GACGAAGGGC AAGGCTATCT GTTGGGAAGG
CCATCACCGA TCGGCGATCT CGCGCAAAAC CGCCAGCCGG CGCAGAGTGA CACTCCGCGA
CATCAGCGCG TCGCTTGA
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| Protein sequence | MMTVMSCITN EHNLLLVSVA ALICLFGSAI TLRLLNRAVS ASGGQRFGWQ FLAAVAGGGG
VWTTHFVAML AYEPSAPVSF DPVMTLLSLV IAMGGLVASF SISGIRANRM FAPLGGAVVG
LSYSAMHYTG MFAFSVMGLI EWQLGYVVAS ILLPVVCSAV AVALVSRPDL RAQRFWMAVT
LFVMGIVGLH FTGMAAYRIT PLTSNFPEVS PAAALALGLA IAIVALIVVG AGMASYLIDT
DVRAHSQQQL RYMAAHDALT GLPNRISFTD RLIEVLHEAR GSGRKFAVIG IDLNRFKEIN
DTLGHSAGDE ALRIVSRRMA QSLDSDEFVA RLGGDEFAAV KTCVTKKEVS AFADRLAEIF
GRPIRVGNIE VTVGASMGAA IWPDDAEAPD ELVNNADLAM YHAKHTFLDV PCFYDSGIGA
SVRKRRQLGE ALRHALEQDE LAIHYQVQKS LSTGEVQGYE ALLRWTHPQL GPIPPSEFIP
IAEENGLVRS LGVWVLRRAC MDAVTWDKPC RVAVNVSAVQ FMDANLPRLV HEVLIETGLP
PQRLELELTE TALIKDKGRS LHIIGQIKAL GVGLALDDFG SGYSSLETLR SFPFDKIKLD
RAFVDGIESD RQSKAIVRAV LALGKSLDIP VLAEGIETDE QMSVLRLEGC DEGQGYLLGR
PSPIGDLAQN RQPAQSDTPR HQRVA
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