| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5623 |
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| Symbol | |
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| ID | 5319925 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 590144 |
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| End bp | 591151 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640777366 |
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| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
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| Protein accession | YP_001314298 |
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| Protein GI | 150377703 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0190299 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.692526 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACACG CACCTGTTCT CAAAGTCGAA AACCTGCAAA CACGCTTCAA GAGCGTCCAG
CGGGGCAAGT ACGTCCATGC GGTCGACGAT GTTTCGATCG AGCTCTATCC AGGCGAGATC
GTCGGTTTGG TCGGCGAATC CGGCTGCGGA AAATCCACGC TCGGAAGAAC CATCGTCGGT
CTCGAGAAGG CAAGTGCTGG ACGGGTACTG CTCGACGGGG TCGACCTCAG CACGCTTTCG
GGCGCCGCAC TGCGAAACAG TCGTCGGGCT CTGCAGTACG TGTTCCAGGA TCCCTATTCG
TCCCTGAACG ATCGTCAGAC GGTTGGCGAG GCGATCGACG AAGCTCTATT GATCGATGGC
CTCAGGTCGG CGGACGAGAG AACTCGTCGG GCCAAGGAAC TATTGGAGCA GGTCGGTCTG
CCTCATACGG CAAGGGACCG TCACACACGC GAGCTATCGG GCGGCCAGCG TCAGCGCGTT
GCCATTGCCA GATCTCTCGC GGTGAACCCG CGAGTTCTGA TCTGCGACGA GCCGGTTAGC
GCCCTCGATC TCTCCATCCG GGCGCAAGTC ATGAACCTGT TCCTGCGCTT GCAGAAGGAT
CTGGGTGTCG CCTGCCTGTT CATCGCCCAT GACCTTGCAC TTGTGAGGCA GGCCGCCTCG
CGCGTTTACG TCATGTATCT AGGCAAGATC GTTGAGCATG GGCCGTCGCA GGAACTGTAC
GATCATCCTG GCCACCCATA CTCTCAGATG TTGCTGGCCT CCGTTCCCGA GGTCGACCCA
CGCGTTGAAA AGCTCCGCAG CGCTCCTTTG CTGAAGGGCG AAGTGCCAAG TCCGACCAAT
CCACCGTCCG GCTGCCGATT CCGGACACGT TGTCCGCTTG CGGTTGAGGA CTGCGCCCTA
AGAGCACCAG CATCACATGT CCTTTCGCCG GACCACAACG CCGCGTGCAT TTTTGCCCCC
GACCTTCATG GAGGGAAGCG CTCGGCTCTA ATTCACCAGG CTGCATAA
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| Protein sequence | MTHAPVLKVE NLQTRFKSVQ RGKYVHAVDD VSIELYPGEI VGLVGESGCG KSTLGRTIVG
LEKASAGRVL LDGVDLSTLS GAALRNSRRA LQYVFQDPYS SLNDRQTVGE AIDEALLIDG
LRSADERTRR AKELLEQVGL PHTARDRHTR ELSGGQRQRV AIARSLAVNP RVLICDEPVS
ALDLSIRAQV MNLFLRLQKD LGVACLFIAH DLALVRQAAS RVYVMYLGKI VEHGPSQELY
DHPGHPYSQM LLASVPEVDP RVEKLRSAPL LKGEVPSPTN PPSGCRFRTR CPLAVEDCAL
RAPASHVLSP DHNAACIFAP DLHGGKRSAL IHQAA
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