Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5595 |
Symbol | |
ID | 5319897 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 562322 |
End bp | 563035 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640777340 |
Product | HAD family hydrolase |
Protein accession | YP_001314272 |
Protein GI | 150377677 |
COG category | [R] General function prediction only |
COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II [TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.606287 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGCAAGA GCCTTCCGGA ATTCAAATAC ATGACTTTCG ACGTCGTCGG CACGCTGATC GACTTCGAAG GCGGCCTCAA GGACTGTCTC GCCGGCATTG CCACCGAGGC AGGTGTCACG ATAGATGGCG AGGAAGCGCT CAACCTTTAC CGCGCAGCGC GCTATTCCAA GGACGCCGAC CTCTTCCCGG ACGATCTCGT ACGGGTCTAT CTTGAAATCG CGCCAAAGCT TGGCCTGCCA GCCGAACCGA AATACGGAGA ACGTTTCAGG GACTCCACGA AGAACTGGAA AGGTTTCGCC GACAGCGCCG AGGCGCTGGC GCGCCTTGCC GAAGGTTGCC GGCTCATCGC GATGACCAAT GCCCGTCGCT GGGCCTTTGA TCTCTTTGCC CAGAAGCTGG GCAACCCCTT TCACGCAGCC TTTACGGCCG ACGATACCGG GACCGAGAAA CCGGACCCCG TCTTCTTCGA GAAGCTCTTC GATTTCGTCG GCTTGGAAGG AAATTCAAAG GACGACATTC TGCATGTCGC CCAGAGCCAG TATCACGATA TCGGCATGTC CCGAAAGCTC GGATTGGCCA ACTGTTGGAT CGAGCGTCGC CACGCACAGA AGGGCTATGG CGGCACGATC GAGCCCGCCG AATTCACCGC GCCCGATTTC CATTTCACCT CCATGGCCGG TCTCGCCGAT GCCGTGGCCG TCGCACGCGG CTGA
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Protein sequence | MRKSLPEFKY MTFDVVGTLI DFEGGLKDCL AGIATEAGVT IDGEEALNLY RAARYSKDAD LFPDDLVRVY LEIAPKLGLP AEPKYGERFR DSTKNWKGFA DSAEALARLA EGCRLIAMTN ARRWAFDLFA QKLGNPFHAA FTADDTGTEK PDPVFFEKLF DFVGLEGNSK DDILHVAQSQ YHDIGMSRKL GLANCWIERR HAQKGYGGTI EPAEFTAPDF HFTSMAGLAD AVAVARG
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