Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5382 |
Symbol | |
ID | 5319684 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | + |
Start bp | 347627 |
End bp | 348835 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640777152 |
Product | conjugal transfer protein TrbL |
Protein accession | YP_001314084 |
Protein GI | 150377489 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3846] Type IV secretory pathway, TrbL components |
TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0685398 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGAAGG TAACTCGTCC GTTCCTGATT GCCGGACTTT TATGCATAGC CTATTCAGCA CCCGCTTTCG CACAAGAGGG ACACGTCCTC ACGGAACTGG AAAACCAAGT CTCGTCCGCT GCGAAGGGGT GGGAGACCAC CATTATGAAT GCCGCACGAT CCCTATTTTG GATTCTGGCG GCAATCGAGA TTGGTATAGC GGCCGTCTGG CTCGCCACTC AGGCCGCGTC GCTGGACAGC TGGTTCGCCG AGCTGGTGCG GCGTATTATG TTCGTCGGCT TCTTCGCATT TATTCTGGAG CAAGGTCCAA CTTTTGCGAG AGCCGTCGTC GACAGTCTTT TCCAGATTGG TGCGGACAGC GATTCAGCTT CACCTGCTGA AGTATTCGAC GCCGGTATCC GCGTAGCCTC GCAAATGTCG CAACAGGTAC AGTTTGGCGT CTTTGAGGAT AATGCCTTGG CGATCGCGGC GGTATTGGCG ATGGGCGTCG TCGTCATTTG CTTCTCGCTT GTCGCAGCCA TTTTCGTGTC GGTCATGGTC GAGATGTATG TTGGCCTCCT CGCCGGTATG ATCATGCTCG GACTGGGCGG CTCGTCCTTC ACCAAGGACT TTGCTGTTCG GTACCTGATC TATGCTTTCG GCGTCGGCAT GAAGCTCATG GCCCTGGTGA TGATCGCCAA GATAGGATCG AGCGTCCTGC TTGGCCTCGC GCAAGCCCCC ACCGCATCAT CCGATAAATT CGTAACTGCC TTAGCGATCG CCGGTATTTC CGTCGTGGTC TTCATCATCG CAATGTATGT GCCGACCATT CTTCAGGGTG TCGTCCAGGG CGCGTCCGTC AGCGGAGGAA TGGAAGCGAT CCGCCATGGC GGACAGGCGG CATCGTTCGC CGCCGGTGCG GGCTTCCTCG CCGCCGGTGC GGCCGGCGCT GGCTTTGAAG CGGGAAAGTT CGCACGAGCA GCGGGTTCAT CCGTCGCAGG TGCGGCTCTT CGAAGTGTGG GTGCCGGAAT CGGGTCGGCA GGACGCGCTG TGGGGTCCGC TGCCAAGGAA AAGGCAATCG GCGCTCCCGG TGCCTATGCC GGATCCATTC TCGGACTAGC CAACGCAAAG CTCGACGAGC AACGCAGTGG GCTTAGCGAA TCCCTCCCGA GCGCAACGAA ATCCCGTAAT CAGGAAGCGA AGGAAGATGG CAGTAAACCG CACGCCTGA
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Protein sequence | MVKVTRPFLI AGLLCIAYSA PAFAQEGHVL TELENQVSSA AKGWETTIMN AARSLFWILA AIEIGIAAVW LATQAASLDS WFAELVRRIM FVGFFAFILE QGPTFARAVV DSLFQIGADS DSASPAEVFD AGIRVASQMS QQVQFGVFED NALAIAAVLA MGVVVICFSL VAAIFVSVMV EMYVGLLAGM IMLGLGGSSF TKDFAVRYLI YAFGVGMKLM ALVMIAKIGS SVLLGLAQAP TASSDKFVTA LAIAGISVVV FIIAMYVPTI LQGVVQGASV SGGMEAIRHG GQAASFAAGA GFLAAGAAGA GFEAGKFARA AGSSVAGAAL RSVGAGIGSA GRAVGSAAKE KAIGAPGAYA GSILGLANAK LDEQRSGLSE SLPSATKSRN QEAKEDGSKP HA
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