| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5277 |
|---|
| Symbol | |
|---|
| ID | 5319579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 236432 |
|---|
| End bp | 238219 |
|---|
| Gene Length | 1788 bp |
|---|
| Protein Length | 595 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640777054 |
|---|
| Product | adenine deaminase |
|---|
| Protein accession | YP_001313986 |
|---|
| Protein GI | 150377391 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1001] Adenine deaminase |
|---|
| TIGRFAM ID | [TIGR01178] adenine deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.899857 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCAGC CATGGTCTGA AATCGCGCCA CGCCTCGTAG ATGTCGCGAT GGGGCGGAAG
CAAGCGGATT TGGTCGTCCG CAACGGCAGG TGGGTGAACG TCTATTCCGG GGAGATCGTC
CCGGGCACCG ATGTCGCGAT CGTCGCGGGC CGCTTCGCCT ATGTCGGTCC CGATGCCGGC
CACACGATCG GGGAGGGGAC CAGGATCGTG GATGCGGCCG GCCGCTACCT CCTACCCGGT
CTCTGCGACG GTCACATGCA TGTCGAGAGC GGGCTGGTGA CGGTCAGCGA GTTCGCCCGC
GCCGTCATTC CGCACGGCAC GACGACCATG TTCGTAGACC CTCACGAAAT CGCCAACGTG
CTCGGCATGC CCGGCGTGAA GCTAATGAAC GACGAGGCGC AGAGCCTGCC CGTCAACATC
TTCGTGCAGG TCCCGAGCTG CGTTCCGAGC GCGCCTGGCC TGGAGAATGC CGGCGCGACG
CTGAGCGCCG TGGACGTGCG CGAAGCCCTT GCCTGGCCCA ACATCATCGG GCTTGGCGAG
ATGATGAACT TCCCGGGGGT CGCTGGGAAC GATCCCAAAA TGGTTGCGGA AATCGCCGCA
ACGCAGGCCG CAGGCCTGAC GGTCGGCGGA CACTATGCCT CTCCGGACCT TGGCCGGGCC
TTCCATGCCT ATGCCGCCGG CGGCCCGGCA GACGACCACG AGGGAACCAC CGTCGACGAC
GCGATCGCGC GCGTTCGGCA GGGCATGCGG GCCATGCTTC GCCTTGGTTC GGCCTGGTTC
GACGTGGCGG CACAGGTCAA GGCGATCACC GAACGGGGCA TCGATCCACG TAATTTCGTG
CTCTGCACGG ATGACAGCCA CTCCGGCACG CTGGTCAATG ACGGCCACAT GAACCGGGTC
GTTCGCCACG CTATCGCCCA GGGCCTGAAG CCGATCACCG CGATCCAGAT GGCGACCCTC
AACACCGCGC AGCACTTCGG CCTGGAGAGG GAGCTGGGCT CGATCGCCCC CGGCCGCCGC
GCCGATCTTA TCGTTACCAC CGATCTGACC GCCTTGCCCA TCGAGATGGT GTTCGGGCGA
GGCCGGCTGC TGGCGGAGAA GGGGGTGCTG GTTGCCGACA TTCCCGCCTA TGACTATCCG
GCGAGTGCGA AAAACACGGT GAAACTCGGC AAGAGGCTTG CCGCAACCGA CTTCGATTTT
TCCGCGGCCG GAGGGTCGGA CGTCGAGGTG CGGGTGATAG GCGTCGTCGA AAACCAGGCC
CCGACCAAAG CCTTGCAGCG CCGGCTGCCG GTGGAAAGCG GCGTAGTGCA GATGGACCGC
GCCGGCGACG TCTGCCAGAT CGCGCTGGTC GAGCGCCATC GGGCGACCGG CGGCGTGGTC
AACGCCTTCG TTTCCGGATT CGGTTACGAC ACCGATTGCG CCATGGCCTC GACGGTTGCC
CATGACAGCC ACCACATGAT CATCGTCGGC ACGAACAAGG CCGACATGGC GCAGGCCGCC
AACCGGCTGC AGGAGGTAGG CGGCGGCATC GTGCTTATTG CCGGCGGGCG AGAGCTCGCT
CTCGTCGAAC TGCCGATCGC CGGCCTCATG TCGGACGAGC GCGCCGAAGT CGTGGCGGAA
AAGGCCAGTC GCCTCGTGGA AGCCATGCGC GCCTGCGGCT GCAAACTCAA CAATGCCTAT
ATGCAGCATT CTTTGCTGGC CTTGGCGGTG ATTCCGGAAC TGCGTATTTC CGACATCGGC
CTCATCGACG TGACGCGCTT CGAAAAGACC GAGGTCATCC TTCGTTAG
|
|---|
| Protein sequence | MLQPWSEIAP RLVDVAMGRK QADLVVRNGR WVNVYSGEIV PGTDVAIVAG RFAYVGPDAG
HTIGEGTRIV DAAGRYLLPG LCDGHMHVES GLVTVSEFAR AVIPHGTTTM FVDPHEIANV
LGMPGVKLMN DEAQSLPVNI FVQVPSCVPS APGLENAGAT LSAVDVREAL AWPNIIGLGE
MMNFPGVAGN DPKMVAEIAA TQAAGLTVGG HYASPDLGRA FHAYAAGGPA DDHEGTTVDD
AIARVRQGMR AMLRLGSAWF DVAAQVKAIT ERGIDPRNFV LCTDDSHSGT LVNDGHMNRV
VRHAIAQGLK PITAIQMATL NTAQHFGLER ELGSIAPGRR ADLIVTTDLT ALPIEMVFGR
GRLLAEKGVL VADIPAYDYP ASAKNTVKLG KRLAATDFDF SAAGGSDVEV RVIGVVENQA
PTKALQRRLP VESGVVQMDR AGDVCQIALV ERHRATGGVV NAFVSGFGYD TDCAMASTVA
HDSHHMIIVG TNKADMAQAA NRLQEVGGGI VLIAGGRELA LVELPIAGLM SDERAEVVAE
KASRLVEAMR ACGCKLNNAY MQHSLLALAV IPELRISDIG LIDVTRFEKT EVILR
|
|---|
| |