| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5122 |
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| Symbol | |
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| ID | 5319424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 76062 |
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| End bp | 77495 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640776900 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001313832 |
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| Protein GI | 150377237 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0451051 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGTTCG GCAAGAAATC CATTTCGGAA AAACAGATAT CCGAGGCAGC GGTCCAGTCC
GTGATCGAAA ATGAACCGCA GGCCGCGCCT GCCCTTGTCC AGGTTCTAAA GCCAACCCAG
GTTGCCGCAA CGGCGAGATT TGACAAGGCC GAACAGTATT ACAGCCTGAA GAAGGAAATC
TTCAGCGCCC TCATCGCTAC GATCGATGTC GCTGCACTCT CCAATATGGA CGTGGAGCAG
GCGCGCGGGG AGATCGGCGC AATTATCAAC GACATCGTTG CCGCCAAGAA GGCCGGCATT
TCGATGGCGG AGCAGAACAA CCTTCTCAGC GACATCTGCA ACGACATTCT GGGCTATGGG
CCGCTCGAGC CGCTGCTTGC TCGCGACGAC ATAGCCGACA TCATGGTCAA TGGCGCAAAC
CAGGTCTTCA TCGAGGTCAA TGGCCGAGTG CAGGAGACGG GGGTTCGTTT TCGCGACAAC
GAACAGCTCC TCAACATCTG CCAGCGCATC GTTAGCCAGG TTGGCCGCCG CGTCGATGAA
TCAAGCCCGA TCTGCGACGC GCGTCTTGCC GATGGCTCCC GTGTGAACGT GATCGCGCCT
CCCCTGGCAA TCGATGGCCC CACCCTGACG ATCCGCAAGT TCAAGAAGGA AAAGCTGACA
CTCGACCAGC TGGTTCGATT CGGCTCGATT TCGCAGGAAG GCGCTGAGGT TCTCAAGATC
ATTGGTCGCG TGCGCTGCAA TGTCCTTATT TCCGGCGGTA CGGGCTCCGG CAAGACCACG
CTTCTGAACT GCCTGACCGG CTATATCGAT CACGGAGAGC GCGTCATCAC CTGCGAGGAC
GCGGCGGAGC TTCAATTGCA GCAGCCGCAT GTGGTTCGTC TCGAAACTCG GCCGCCGAAC
ATCGAGGGGC AGGGCGAGAT CACCATGCGC AGCCTGGTGA AGAACTGCCT GCGTATGCGG
CCCGAGCGGA TCATCGTCGG CGAGGTGCGC GGACCCGAGG CCTTCGATCT ATTGCAGGCG
ATGAACACCG GCCACGACGG CTCGATGGGA ACGCTGCACG CAAACTCCCC GCGCGAAGCA
ATGGCTCGCG TCGAGGCGAT GATCACCATG GGCGGCAGTT CGCTGCCGGC CAGGACGATC
CGGGAGATGC TCGTCTCATC GGTCGACGTC ATCGTGCAGG CGGCCCGTCT TCGCGACGGT
TCGCGCCGGA TCACCCATAT CACCGAAGTG CTCGGCATGG AGGGGGACGT GATCACGACA
CAGGACCTCT TCATCTACGA CATCCTTGGC GAAGACGAGA AGGGGAACAT CATTGGAAGA
CATCGTTCGA CCGGCATTGG TCGCCCGGCA TTCTGGGACC GCGCCCGTTA TTACGGCGAA
GAGGGCCGCC TTGCCGCGGC CCTCGATGCG GCCGAGATGA AGGCGGCCGC TTGA
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| Protein sequence | MMFGKKSISE KQISEAAVQS VIENEPQAAP ALVQVLKPTQ VAATARFDKA EQYYSLKKEI
FSALIATIDV AALSNMDVEQ ARGEIGAIIN DIVAAKKAGI SMAEQNNLLS DICNDILGYG
PLEPLLARDD IADIMVNGAN QVFIEVNGRV QETGVRFRDN EQLLNICQRI VSQVGRRVDE
SSPICDARLA DGSRVNVIAP PLAIDGPTLT IRKFKKEKLT LDQLVRFGSI SQEGAEVLKI
IGRVRCNVLI SGGTGSGKTT LLNCLTGYID HGERVITCED AAELQLQQPH VVRLETRPPN
IEGQGEITMR SLVKNCLRMR PERIIVGEVR GPEAFDLLQA MNTGHDGSMG TLHANSPREA
MARVEAMITM GGSSLPARTI REMLVSSVDV IVQAARLRDG SRRITHITEV LGMEGDVITT
QDLFIYDILG EDEKGNIIGR HRSTGIGRPA FWDRARYYGE EGRLAAALDA AEMKAAA
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