| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5097 |
|---|
| Symbol | |
|---|
| ID | 5319399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 45441 |
|---|
| End bp | 46208 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640776875 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001313807 |
|---|
| Protein GI | 150377212 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.515865 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.508699 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTCA GGAGCCGCGT CTTCATCGTC ACGGGGGCCA GTTCCGGGCT CGGCGCAGCC
GTGACCCGCA TGCTGGCTGG CGAAGGCGCG ATCGTGCTGG CCTTGGACGT GAAGCCGCAA
GCCGGGGAAA AGCTTGCCGC CGAGCTTGGT GCGACCGTGC ATTTCCGAAA TGTCGATGTG
ACGAACGAGG CTGACGCCAC TGAGGCACTG GCGTTTGGGC GGCGGGAATT CGGTCGTCTC
CATGGATTGG TGAATTGTGC CGGTACCGCG CCCGGCGAAA AGATTCTCGG TCGCAACGGC
CCGCACGGGC TCGATAGTTT CGCCCGCGCC GTCGCCGTCA ACCTTGTCGG GACATTCAAC
ATGATGAGGC TTGCCGCCGA GGTCATGTCG CAGGGAGAGC CGGACGCCGA GGGCGAGCGG
GGGGTGATCA TCAATACGGC CTCGATCGCC GCCTTCGACG GGCAGATCGG ACAGGCTGCC
TACGCCGCAT CGAAGGGAGG CGTTGCCGCG CTGACGCTCC CGGCCGCGCG CGAGCTCGCT
CGCTTCGGAA TTCGCGTCGT CGCCATTGCG CCGGGCATCT TCGATACGCC TATGATGGCC
GGCATGCCCC AGGATGTTCA GGACGCCCTC GCGGCAAGTG TGCCCTTTCC CCCGCGCCTC
GGCCGGGCGG AGGAGTATGC CGCCCTCGTA AAGCATGTTT GCGAGAATAC GATGCTCAAT
GGCGAGGTCA TTCGCCTCGA CGGGGCTTTG CGCATGGCGC CCCGGTGA
|
|---|
| Protein sequence | MQLRSRVFIV TGASSGLGAA VTRMLAGEGA IVLALDVKPQ AGEKLAAELG ATVHFRNVDV
TNEADATEAL AFGRREFGRL HGLVNCAGTA PGEKILGRNG PHGLDSFARA VAVNLVGTFN
MMRLAAEVMS QGEPDAEGER GVIINTASIA AFDGQIGQAA YAASKGGVAA LTLPAARELA
RFGIRVVAIA PGIFDTPMMA GMPQDVQDAL AASVPFPPRL GRAEEYAALV KHVCENTMLN
GEVIRLDGAL RMAPR
|
|---|
| |