Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5092 |
Symbol | |
ID | 5319394 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | + |
Start bp | 41190 |
End bp | 41897 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640776871 |
Product | 3-oxoacid CoA-transferase, A subunit |
Protein accession | YP_001313803 |
Protein GI | 150377208 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAAGA CCGTAGACAG TCTCGCGGAG GCGGTCGCCG AGATCGGCGA CGGCGCAACC GTTATGATCG GGGGCTTCGG TGGTTCCGGA GCGCCTATAG AACTCATCCA CGCCTTGATT GATCTGGGCC CGAACGACCT GACCATCATC AATAACAACG CAGGCAACGG CCGAATCGGT ATTGCCGCGA TGATCGATGC CGGGATGGTG CGGAAGATGA TTTGCTCATT CCCGCGTTCC TCCGATCCGC GAGCGTTCAC TGAGCGTTAT CTGAAAGGAT GTATCGAGCT TGAATTGGTA CCCCAAGGGA CTCTTGCAGA GCGGATACGC GCCGGCGGCG CTGGTATCCC CGCTTTCTAC ACTCCGACTG CGTTCGGAAC CGAGCTCGCC GCGGGCAAGC CAACGGCGGA ATTCGACGGT CGTACCTATG TGCAGGAAAG GTGGCTCAAG GCTGACTTTG CTATTGTCAA AGCGCATGTC GGCGACACGC ATGGCAACCT GACCTTCAAC AAGGCTGCAC GCAACTTCAA CCCGCTGATG TGCATGGCGG CCAGGACGAC CATCGTCCAG GTCTCCAGAA TCGTGCCTGC CGGAGTTATC AATCCCGAGC ACGTCATCAC TCCGGGCATC TTCGTGAACA AGGTCGTCGA AGTCCCCTTC CCGCAGCAGG AAGAAGAACT GGTACGAGCA GGAGTGAGCT ACCCATGA
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Protein sequence | MDKTVDSLAE AVAEIGDGAT VMIGGFGGSG APIELIHALI DLGPNDLTII NNNAGNGRIG IAAMIDAGMV RKMICSFPRS SDPRAFTERY LKGCIELELV PQGTLAERIR AGGAGIPAFY TPTAFGTELA AGKPTAEFDG RTYVQERWLK ADFAIVKAHV GDTHGNLTFN KAARNFNPLM CMAARTTIVQ VSRIVPAGVI NPEHVITPGI FVNKVVEVPF PQQEEELVRA GVSYP
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