Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4966 |
Symbol | |
ID | 5318481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 1479807 |
End bp | 1481120 |
Gene Length | 1314 bp |
Protein Length | 437 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640776748 |
Product | TRAP dicarboxylate transporter, DctM subunit |
Protein accession | YP_001313680 |
Protein GI | 150377084 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0224202 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCTGT TGCATCTCGC CGGCCCCTCG CTTCTGGTCG TCGTGCTGTT CTTGCTGTCG ACGCCGATCA CCTGGGCCAT GGCGATCGGG GCGCTGGCCT TCTTTCTCAT CAATATGGAC ATGATCCCGC TGGCCAACTT CGCGCAAGAA GTGGCGGAGG GCACTCAATC CGTATCCCTG TTGGCCCTGC CGCTATTTGT GCTTGCCGGC TGTATCATGA ACGCATCCGG CATCACCCGG CGTTTGTTGA CGCTTGCAGA CGTGCTGGTC GGCCACATGA CCGGCGCGCT GGCGCAGATG TGCACGGTAC TCGGCACCTT GCTCGGCGGC CTTACTGCGT CTGCGAATGC CGATGCGGCG ATGCTCGCCA AAACGCTCGG CGTCGAGATG TCTGAAAGAG GCTATAGCCG CGCCTTCGCT GCGGTCATCA CGTCCTCGGC GGCCATCATC ACCAGCCTTA TTCCGCCCTC CATCGGCCTG ATCGTTTATG GCTTTCTGGC GGAGACTTCC ATCGGCCGGC TCTTCGCGGC GGGGGTGGTG CCCGGCCTCC TTCTGGCAGC CGGGCTGATG GTGACCACCT ATTTCATCGC CCGCAAGCGT GACTACAAAC CGCTGCGCAA GCAGCGCGCC ACCCGCGCGG AGGCGACCCG GGCGCTGATC GACGGCCTCT GGGCGCTGTC GATCCCGGTG GTGATCTTCG CGGGTACGCG GTACGGTCTT TTCACGACCA CCGAAGCCGG TGCCGTGGTC GTCGTGTACG TGCTCTTTGT CGCTGTGTTC GGCTACCGGG AGTTCACCGT CCGCCAGATT CCGGAGGTTT TGGCCGAAGC TGTACGCGAT TCAGCCGTGG TGATGATCAT GATCTGCGCG GCGGCAGCCT TCGGTTTCTA TCTCGCCTGG GAGCAGGTGC CGCAGGCCAT GTCGGGCTGG CTCGGCGAAG CGACGGACAA CCCGCTCCTG ATGCTGCTCC TCATCAACGT GCTGCTGATC GTCATCGGGA CGGCAATCGA GGGATCGGCG GCGCTGATCA TCCTCACGCC GATGCTGATT CCTCTCATCG ACGGCGTAGG CATCGATCGC GTGCATTTCG GCATCGTCTT CATCACCAAT CTGACCATTG CCGGTATTAC ACCGCCGGTT GGGGGGCTGA TGTATATTTC GTCCATGGTG CTGAAGGTGC CGATGATGGC CTATGCACGC GAGGTGCTGC CCTATCTGGC GATGATGATG GCCCTTCTCA TCGTGCTGAG CATGTTTCCG CAACTGTCGC TTTGGTTGCC TGATCTGGTC TATGGGACGT CCGCGGTCCA ATAG
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Protein sequence | MTLLHLAGPS LLVVVLFLLS TPITWAMAIG ALAFFLINMD MIPLANFAQE VAEGTQSVSL LALPLFVLAG CIMNASGITR RLLTLADVLV GHMTGALAQM CTVLGTLLGG LTASANADAA MLAKTLGVEM SERGYSRAFA AVITSSAAII TSLIPPSIGL IVYGFLAETS IGRLFAAGVV PGLLLAAGLM VTTYFIARKR DYKPLRKQRA TRAEATRALI DGLWALSIPV VIFAGTRYGL FTTTEAGAVV VVYVLFVAVF GYREFTVRQI PEVLAEAVRD SAVVMIMICA AAAFGFYLAW EQVPQAMSGW LGEATDNPLL MLLLINVLLI VIGTAIEGSA ALIILTPMLI PLIDGVGIDR VHFGIVFITN LTIAGITPPV GGLMYISSMV LKVPMMAYAR EVLPYLAMMM ALLIVLSMFP QLSLWLPDLV YGTSAVQ
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