Gene Smed_4959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4959 
Symbol 
ID5318474 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp1471511 
End bp1472533 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content63% 
IMG OID640776741 
Productglycosyl transferase family protein 
Protein accessionYP_001313673 
Protein GI150377077 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0463] Glycosyltransferases involved in cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0171285 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCTC CTCTGAGCAT CCCCGACGTC ACATTCGTCG TTGCCGCCTA CAATTCGGCA 
GACACGATCA TGCGCGCAAT CGAAAGCGCC CTGTCTCAGG AAGGCGTCAC GGTCGAAGTT
ATCGTGGTCG ACGACTGCTC TACGGACGCG ACGCCGGCAC TTGTGGCAGC GATCCGGGAC
TTGCGCGTCC GGCTGATCGC GCTCGACCGC AACCGTGGGC CCGGCGGCGC ACGCAACGCC
GGTATCGGGG CGGCACGCGG CAAGTGGATC GCGGTTCTCG ATTCGGACGA TACGGTCCGG
CCGGACCGGC TCAGGCGCAT GATAGAGCGA GCGGATTCGG CCGGAGCACA GATCGCGGTC
GATAATATTG ATGTCGTTTC GCTCGGCGGG GGCAGTCTCA GGATGTTCCC CGAAGCGCAG
CTCGCCCGCA TGCCGCAGCT TACACTTCCC GCTTTTATCG GGTCGAACAT ACTCTTTCGA
TCCGAGCACA ATTTCGGCTA CATGAAACCG GTCTTCGAGC GCCGCTTCCT CGAAAATCAT
GGACTTCGTT TCGACGAGAC GCTCCGCATC GGCGAGGACT ATATCCTGCT TGCATCGGCG
CTTGCCTGTG GCGGGCGCTG CGCGGTCGAG CCCTCGGCCG GCTATATCTA TCATATCCGC
GAGGGCTCCA TCTCGCGTGT GCTGCGGCTC GAGCATATAG ACGCCATGAT CGCCGCCGAC
GAGGCGTTTC TGCAGCGCTT CGCGCTCGAC GCCCAGGCAC AGGAAATGCA GCGCAAACGT
ATGCGCGGCT TCCGTCAGGC TCGCTCCTTT CTGGTCCTTG TCGATCAGTT GAAAAAGAGA
TCGTTGGCCG GCGCGTTCAA AACCGCACTG GCCGACCCGC TCGCACTCCG GCATCTCGGC
ATGCCGATTG CTGCCCGATT GCGCCGCCTT GCCGCGCGAT TGCTGCATCC TCCGTCCCAT
GCCCCCATGA CGGCGGTGGA ACGATCGCCG TTGGGCGACG ACCCCCACAC AAGCAAAGGA
TGA
 
Protein sequence
MSAPLSIPDV TFVVAAYNSA DTIMRAIESA LSQEGVTVEV IVVDDCSTDA TPALVAAIRD 
LRVRLIALDR NRGPGGARNA GIGAARGKWI AVLDSDDTVR PDRLRRMIER ADSAGAQIAV
DNIDVVSLGG GSLRMFPEAQ LARMPQLTLP AFIGSNILFR SEHNFGYMKP VFERRFLENH
GLRFDETLRI GEDYILLASA LACGGRCAVE PSAGYIYHIR EGSISRVLRL EHIDAMIAAD
EAFLQRFALD AQAQEMQRKR MRGFRQARSF LVLVDQLKKR SLAGAFKTAL ADPLALRHLG
MPIAARLRRL AARLLHPPSH APMTAVERSP LGDDPHTSKG