Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4944 |
Symbol | |
ID | 5318271 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 1455769 |
End bp | 1457073 |
Gene Length | 1305 bp |
Protein Length | 434 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640776727 |
Product | O-antigen polymerase |
Protein accession | YP_001313659 |
Protein GI | 150377063 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.367217 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.330229 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAATAT CCAAGGCGAG CCTTGTCAGA CCTGGAGCGA ATGACGTCTT CGGCACCTTC GCCTTGGCCC TGTCGGTCTT CGTCTTCGCC TATTCGGCGC GCTTCGGACA GGTTTCGATT CTCGCCTATT ATGGCCTGTG GCTGCCGCTG GTCCTTGTCG ACTACCGAAA GGTTCTCGGC AACTATGCCA GCTATCTCTG GATCCTGTCG TTCACCATCT TCGCCTGCCT CACGATCTTC TGGTCGGCGG CGCCATCGCT GTCGCTGCGG ACGGGAATAC AATATCTGAG CCACGTCGTC TGCGCTCTCA TCGCAATGCG TACGATCGAC ATCCGCACGC TGACGCGCGG CATGATTGCA GGCGTTGCGA TCGTGCTCCT CTATTCGCTG CTCTTCGGCT CGTATCATTA CGATCCCCTG GATGGCACCT ATAGCTTTGT CGGTGCGTTC GCATCGAAGA ACCAGTTGGG CTTCTACGCC TCGCTCGGCA TCTATTTCGC TTTCGCCGCC GTTTTTGTTC TCGGCGAAAG AGGCCTCTGG ATGGGCGCGG CAGGGGGCGG CGGATTGCTT GCCGCCTATT GCCTCCTCAT GTCGCAATCG GCAACGTCGG TGCTGACGAC GGCAGCGGTC ATCGGCCTCT GCCTCGGCAT GCGCGCGATC ACGACCTTGC GTCCCGCGAG CAGAAAGATC CTCTTCACCG CCGCATCGGT GTTCGGCGGC GTGGCTGCCG TGGCAATAAT CTACGCCGGC GGCATCGATA TGATCCTCGG CGCTTTCGGC AAGGACTCGA CGCTGACCGG CCGCACCTAT CTCTGGCAGC AGGGCATCGA GGCGGCAAAG GCGTCGCCCC TCGTCGGCAT CGGCTATCAG GCTTATTGGG TGCAGGGCTT CTCCGAAGCC GAGCGGCTAT GGGAGGAGTT CTATATCGGC TCGCGCGCCG GCTTTCATTT CCACAACACC TTCATAGAGA CGGCTGTGGA GACGGGTCTC ATCGGGCTTG TTCTGCTGAC AATGGTGCTG GCCATGACTT TCTTCGGGCA GCTGAAGCGC CTGCTTTCGG AGGATTGCGA CCCGGAATCG ATGGTCCTCT TCGGTGTTGG AGCACTGCTT TTGGTGCGCG CCTTCGTGGA GATCGATATC CTCACGCCCT ACCATATCGG TTCCTTCCTC CTGTACTTCA CCGCTGGGAA GCTGACGATC CCGCGCCGCC GGGTGGCGGC ATTGCCTTGG CCGCCGCAGC TTCATCCCGC ACCCTACGGA CGGGCCTTCA CTCCGATGAT GCAGCGACCC GGGGAAAACC GTTGA
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Protein sequence | MRISKASLVR PGANDVFGTF ALALSVFVFA YSARFGQVSI LAYYGLWLPL VLVDYRKVLG NYASYLWILS FTIFACLTIF WSAAPSLSLR TGIQYLSHVV CALIAMRTID IRTLTRGMIA GVAIVLLYSL LFGSYHYDPL DGTYSFVGAF ASKNQLGFYA SLGIYFAFAA VFVLGERGLW MGAAGGGGLL AAYCLLMSQS ATSVLTTAAV IGLCLGMRAI TTLRPASRKI LFTAASVFGG VAAVAIIYAG GIDMILGAFG KDSTLTGRTY LWQQGIEAAK ASPLVGIGYQ AYWVQGFSEA ERLWEEFYIG SRAGFHFHNT FIETAVETGL IGLVLLTMVL AMTFFGQLKR LLSEDCDPES MVLFGVGALL LVRAFVEIDI LTPYHIGSFL LYFTAGKLTI PRRRVAALPW PPQLHPAPYG RAFTPMMQRP GENR
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