| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4936 |
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| Symbol | |
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| ID | 5318263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 1446421 |
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| End bp | 1448241 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640776719 |
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| Product | ABC transporter |
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| Protein accession | YP_001313651 |
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| Protein GI | 150377055 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4178] ABC-type uncharacterized transport system, permease and ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00595955 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.404726 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACC AGACCGGCAA AAGGAAGAAG GATCGAACGC CCGCCGCACC ACCGGAAGTC
AGCAATATTT GGCAGCAGTT CGAGATGATG CGCCACGCCT TCGCCGCCTC GCCGGTACTG
AAGCCCATCC TGTGGCTGAC CACCGGGAGC TTCGCCGTCA TCGTCGCCAC CGCGATCGGG
CAGGTCGTTC TGAACCGCTG GTACCGGCCC TTCTTCGATG CGATTGAACG GCGGGACATC
AACAGTTTCT TTTATCAGCT CATGTTGTTC GTCGCGATCG CCGGCGTCCT CCTGGTCTTC
AACGTCGGTC AGCAGTGGCT CAATCAGATG GTGCGCTTGA AGCTGCGCGA GGGACTGACA
CTGGATCTGA TCAACGAATG GATGCGGCCT CGACGCGCCT TTCGACTTGC AAATGCCGGC
ACGATCGGAG TGAACCCGGA TCAGCGGATG CAGGAGGATG CGGGGCATCT CGCAGATCTT
ACGACCGGGC TCGGTTTCGG CCTCGTGCAA TCCTCGATCA TGCTCATATC TTTCGTCGGC
GTCCTATGGT CCCTCTCAGC CGGTTTTGCC TTCGATATCG GCGGACAGAA GCTCGAAATT
CCTGGTTATA TGGTGTGGGC GGCAATTCTC TATGCCGGTT CGGCATCGTG GTTGAGCTGG
CTGGTCGGAC GCCGAATGAT CGTCTTGAAC GGCGAGCGCT ACGCCCGTGA GGCCGACCTG
CGCTTTTCCA TGATGCATGC CAACGAGCAT ATAGACGGCA TATCGCTTGC GGGCGGAGAG
GCCGGCGAAC GCCGGCGCCT GCAACTCGAT CTTGCTTCGG TCCTCGTCGC CACACGCAAC
ATATTCCGCG CCGAGATCAA TCTTGCCTGG GTCCAGGACG GCTACGGCTG GGTCACGGTC
GTCGCCCCCA TCCTCGTTGC CGCGCCCGTC TATTTCGCGG GAAACATCAG TTTCGGCGGC
CTGATGATGG CGGTTGGCGC CTTCAACCAG GTGCATTCGT CGCTCAAATG GTTCGTGGCC
AATGTCAGCG CGATCACCGA CTGGCGGGCG ACGCTGCTGC GCGTCGCGGC CTTCCGTCGC
GCCCTCGTCG CGGCGGATAC CCTGCATGGC GACGAAAAAC GCATCGAATT CGTCGAGAAC
GACAGGGATG TGATGACGCT TGATAATCTG GAGGTCGTCT CCCCCTCGGG CAGAACCAGT
TTGGCCGAGT CCCGGATCGA AATTGCCCCC GGCCAGAGGG TTAACATCAT CGGTGATCCA
CATGCCGGGA AGACGCTGCT TTTCCGGGCC GTGGCGGGGC TATGGCCCTG GGGAAGCGGC
CGCGTGGGAA TGCCGGCGGG CGAGGCCGTG GCCTTCATTC CACGCGCACC CTATTTCCCC
CGTGGCCGGC TCAGGGATGC GCTTGCCTAT CCGCACGCTG ACGAATTTGC GGATTCAGTC
CTCGTAAGCG CACTTTCAAA GGTCGGTCTC GATCATCTGG CAACCTCGCT GAACAGAGAG
GCACGTTGGG AGCGTGAACT CGGCGAAGAT GATCAGCGCC TCCTGGCATT TGCTCGACTG
CTGGTGCAAA AGCCCCGCTG GGTGGTCATC GACGAGGCGC TCGAGAGCAT GGACAGCGAT
GCGCTGAAAC GCGCGCTTTC GATTTTCGAG GTCGACCTGC GGGAGACCGC GGTCATCAAG
ATCGGCCGCA CGCCGCGGAA CGGCGGGTTG TTTTCCCGCG TGATTCGTAT CGTCAAGGAC
GCGGATGCCC CAGCCCTCAA ACCGGTGCGC CTAGGAGGCG GGGTCGCCGA ATTGGAGTTG
GCGGCGCGCA GCGCGCCTTG A
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| Protein sequence | MKNQTGKRKK DRTPAAPPEV SNIWQQFEMM RHAFAASPVL KPILWLTTGS FAVIVATAIG
QVVLNRWYRP FFDAIERRDI NSFFYQLMLF VAIAGVLLVF NVGQQWLNQM VRLKLREGLT
LDLINEWMRP RRAFRLANAG TIGVNPDQRM QEDAGHLADL TTGLGFGLVQ SSIMLISFVG
VLWSLSAGFA FDIGGQKLEI PGYMVWAAIL YAGSASWLSW LVGRRMIVLN GERYAREADL
RFSMMHANEH IDGISLAGGE AGERRRLQLD LASVLVATRN IFRAEINLAW VQDGYGWVTV
VAPILVAAPV YFAGNISFGG LMMAVGAFNQ VHSSLKWFVA NVSAITDWRA TLLRVAAFRR
ALVAADTLHG DEKRIEFVEN DRDVMTLDNL EVVSPSGRTS LAESRIEIAP GQRVNIIGDP
HAGKTLLFRA VAGLWPWGSG RVGMPAGEAV AFIPRAPYFP RGRLRDALAY PHADEFADSV
LVSALSKVGL DHLATSLNRE ARWERELGED DQRLLAFARL LVQKPRWVVI DEALESMDSD
ALKRALSIFE VDLRETAVIK IGRTPRNGGL FSRVIRIVKD ADAPALKPVR LGGGVAELEL
AARSAP
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