Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4889 |
Symbol | |
ID | 5318051 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 1399372 |
End bp | 1400373 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640776674 |
Product | substrate-binding region of ABC-type glycine betaine transport system |
Protein accession | YP_001313606 |
Protein GI | 150377010 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.64177 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAAC TGCTTGCGTC TACATGTCTC ATGCTTTGCC TCACGGCGGG AGCATCGGCG TCGAATGCTG CCGAATGTGG GAGCGTCACC ATCGCCAGCA TGAACTGGCA GAGTGCCGAG GTCCTCTCGA ACCTGGACAA GTTCATTCTC AACGAAGGTT ACGGGTGCAG CGCCGAGATA ACGATTGGCG ATACCGTGCC GACAATTACC TCCATGGCGG AGAAAGGTCA GCCCGATATA GCACCCGAAG CCTGGATCGA CCTCCTGCCC GACGTCGTCA AGAAGGGGCA GGACGACGGT CGTATCGTCA CGGTCGGTTC CCCGTTGCCG GATGGCGGCG TGCAGGGCTG GTGGATTCCG AAGTATCTTG CCGACGCCCA CCCGGATATC AAAACAATCG GCGACGCTCT GAAGCACCCC GAGCTCTTCC CCGCCCCCGA GGATTCGAGC AAGGGCGCTC TGCTGAACGG ACCGCAGGGC TGGGGCGGCA CAGTCGTGAC GACGCAGCTT TTCAACGCGT TCGACGGCGA GAAAGCCGGA TTCACCCTGA TCGATACCGG CTCTGCCGCC GGCCTGGATG GCGCCATCGC CAAGGCGTAT GAGCGCAAGG AAGGTCTTTT TACCTATTAC TGGTCCCCGA CTGCCCTCCT CGGCAAATAC GAGATGGTCA AGCTCGAGCC CGGCGTTCCG CACGACTCGG CCGAGTGGAA GCGCTGCAAC ACGGTAGCGG ATTGCCCCGA TCCCAAACCG AACGCATGGC CCGTCGACAC GATCGTGACG CTGGTCGCCA AGCCCTTTTC CGAGCGGGTC GGCCCCGAGG TGATGGATTA TCTGACCAAG AGGTCCTGGA GCAACGAGAC CGTCAGCAAG TTGATGGCCT GGATGACCGA CAATCAGGCA AGCGGTGAAG AAGGTGCGAA GCGCTTCCTC GAAGAGAACC AAGACATGTG GTCGAAGTGG GTCTCGCCCG AGGCCGCGGA GAAGATCAAA GCCGCGCTCT GA
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Protein sequence | MNKLLASTCL MLCLTAGASA SNAAECGSVT IASMNWQSAE VLSNLDKFIL NEGYGCSAEI TIGDTVPTIT SMAEKGQPDI APEAWIDLLP DVVKKGQDDG RIVTVGSPLP DGGVQGWWIP KYLADAHPDI KTIGDALKHP ELFPAPEDSS KGALLNGPQG WGGTVVTTQL FNAFDGEKAG FTLIDTGSAA GLDGAIAKAY ERKEGLFTYY WSPTALLGKY EMVKLEPGVP HDSAEWKRCN TVADCPDPKP NAWPVDTIVT LVAKPFSERV GPEVMDYLTK RSWSNETVSK LMAWMTDNQA SGEEGAKRFL EENQDMWSKW VSPEAAEKIK AAL
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