Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4877 |
Symbol | |
ID | 5318924 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 1382989 |
End bp | 1384011 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640776662 |
Product | extracellular solute-binding protein |
Protein accession | YP_001313594 |
Protein GI | 150376998 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
TIGRFAM ID | [TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily [TIGR03261] putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.713524 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.38801 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGTTCT CAAAGGCCTT TCTGGGCGCC GCGACCGCCT TCCTTCTCGC ATCCACCGCC GCCTATGCCG AAGCCGAACT TACGGTCTAC ACGTCTGTCG AGGCGGTTGA CCTCGACCGT TACAAGGAGA CTTTCGAGAA GGCTCACCCC GACATCAAGA TCAACTGGGT CCGCGACTCG ACAGGCGTGA TGACCGCCAA GCTACTGGCG GAGAAGGATA ATCCGCAGGC GGACGTTGTG TGGGGCGTGG CTGCGACATC GCTGCTGCTC CTGAAGTCCG AGGGCATGCT CGAACCCTAT GCCCCGAAGA ATGTCGAGGC CCTGGATCCG AGATTCGTCG ATGGCGACAA GCCGCCGAGC TGGGTAGGGA TGGACGCATA TGTGGCGGCT CTCTGCTACA ACACGGTGGA GGCCGAGAAG CTCGGCCTGA CGCCGCCAAC CAGCTGGAAG GATCTGACCA AGCCCGAATA CAAGGGTCAC GTCGTGATGC CCAACCCCAA TTCCTCCGGA ACAGGCTTCC TCGACGTCTC CGCCTGGCTT CAGACGTTCG GCGAAGAGGA AGCCTGGTCC TTCATGGACG CCCTGCACGA GAACATTGCC GCCTATACCC ATTCGGGTTC CAAGCCTTGC AAGATGGCAG CGTCCGGCGA AACCGTCATC GGCGTCTCCT TTGAGTTTCC GGGCGCCAAG GCGAAAACGT CGGGCGCGCC GATCGACATC ATTTTTCCCG CTGAAGGATC GGGCTGGGAA GCAGAGGCCA CGGCGATCAT TGCAGGAACG GCCAATCTCG AGGCGGCGAA AACGCTGGTC GACTGGTCGA TCAGCAAGGA AGCCAACGAG ATGTACAATG TCGGTTATGC AGTCGTGGCT TATCCGGGAG TCGCCAAGCC GATCGAGAAT CTTCCCGACG ACGTTGCCGA GAAGATGATC GAGAACGACT TCGAGTGGGC CGCGAACAAC CGTGCCCGTA TTCTGAAGGA ATGGCAGAAG CGTTACGACG CAAAGTCCGA GCCCAAGTCC TGA
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Protein sequence | MPFSKAFLGA ATAFLLASTA AYAEAELTVY TSVEAVDLDR YKETFEKAHP DIKINWVRDS TGVMTAKLLA EKDNPQADVV WGVAATSLLL LKSEGMLEPY APKNVEALDP RFVDGDKPPS WVGMDAYVAA LCYNTVEAEK LGLTPPTSWK DLTKPEYKGH VVMPNPNSSG TGFLDVSAWL QTFGEEEAWS FMDALHENIA AYTHSGSKPC KMAASGETVI GVSFEFPGAK AKTSGAPIDI IFPAEGSGWE AEATAIIAGT ANLEAAKTLV DWSISKEANE MYNVGYAVVA YPGVAKPIEN LPDDVAEKMI ENDFEWAANN RARILKEWQK RYDAKSEPKS
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