| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4697 |
|---|
| Symbol | |
|---|
| ID | 5318836 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 1214217 |
|---|
| End bp | 1215965 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776495 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001313427 |
|---|
| Protein GI | 150376831 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01188] daunorubicin resistance ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.793973 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.717601 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCA TGGCAACGGC GCTCGACACG ACCCCGTTTG TGAGGCTCAC CTCTGTCACC
AAGCGATTCG GTTCAGCGGC CCCTGCTTTA GACGCGGTTG CGGGCGATAT CCTGGGTGGA
AGGATCACCG GCATCGTCGG CCCAGATGGG GCGGGCAAGA CGACGCTGAT CCGGCTGATG
ACAGCTCTGA TGCTGCCGGA TGCGGGCAGC GTCGAAGTGC TTGGTTACGA TACCCGCTCG
GATCCCGCCG GCATTCAGGC GTCCATCGGC TATATGCCGC AGCGGTTCGG CCTCTACGAA
GACTTGTCGG TTCAGGAGAA TCTCGACCTT TACGCCGATC TGCGCGGTCT GCCCAAGTCC
GAGCGGAGCC GCACCTTCGG CGAGTTGCTC GAGTTCACGG ATCTTGCCCG GTTTACCACC
CGGCTCGCCG GCAAGCTCTC GGGCGGCATG AAACAGAAGC TCGGGCTGGC TTGCGCGCTC
CTTCGCAAGC CGCGGCTCCT GTTGCTCGAC GAGCCCGGCG TCGGTGTCGA TCCGATTTCA
CGGCGCGACC TCTGGAAGAT GGTCGAGAAT TTGAAGGCGG AAGGCATCGG CGTCGTCTGG
TCGACCGCCT ACCTGGAAGA AGCAGAAGCC TGCGATCATG TCTTTCTGCT CAACCAGGGA
AGGCTATTGT TTTCCGGTCC GCCGGCCGAG ATGACCGGCC GCGTCGAGAA CCGGGTCTTC
CGCCTCTCCG GCATCCGTGG ACGCCGGCGC GAAAAGCTTG CGCATTTTCT CGAAATGGAA
GGCGTCGTCG ACGGGGTGAT CCAGGGCGAA GCCATACGTC TTGTCATGAA GCCGGGCCTT
CAACCATTTC AGTCCAGAGA GGCGACCGGC GCGTATTGCG CGGCAGTCAC GCCGCCGCGC
TTCGAAGACG CGTTCGTCGA TATGCTCGGT GGCGGCCCCG GCGGACGGTC GAGGCTTGCG
GAAACACAGC GCGCCTTCGC CTCAGAAGAC GGCAGATCCG TGATAGAGGC ACGTGGGCTG
ACGAAGCGGT TCGGCGATTT TACCGCCGCA GACAACATCA CTTTCGACAT ACCGCGCGGC
GAAATTTTCG GCCTCCTCGG TCCGAACGGC GCCGGCAAAT CGACAACCTT CAAGATGTTG
TGCGGTCTTC TGACGCCGAC CGCTGGCGAC GGCCGCGTCG CCGGCTTCGA TCTCAGGCGC
GATGCGCCGG CGGCACGTAA TCGGCTGGGC TACATGGCGC AGAAGTTCTC CTTATACGGC
GATCTGAGCG TCATCCAGAA CCTGAATTTT TTTGCCGGCG TTTACGGACT TGCCGGTGCG
CGAAAGCGCG AGCGCATCGC GCTTATGGGA GAGATCTTCG ATTTCCGCAG CGTGCTCGAC
ATGTCGGCCA AGGATCTGCC GCTCGGCGTC AAGCAGCGCC TGGCGCTCGC ATGCGCGGTC
TTGCACGAAC CGGAAGTGCT CTTTCTCGAC GAGCCGACCT CCGGAGTCGA TCCGATCACC
CGGCGGGAGT TCTGGACCCA CATCAATGGC CTCGTAGAAA AAGGCGTGAC CGTACTCGTC
ACCACGCACT TCATGGATGA GGCGGAGTAT TGCGACCGCA TATCGCTCAT TTATCGCGGC
CGTTCGATCG CGCTTGGCTC ACCCGACGAA ATGAAGGCCC GCATCGCGAG CGAGGACCTT
CCCGACCCGA CAATGGAGGA CGCATTCATA GCCCTCGTCC AGGGCTCGGA GGCGAAGGAC
GCAGCATGA
|
|---|
| Protein sequence | MTAMATALDT TPFVRLTSVT KRFGSAAPAL DAVAGDILGG RITGIVGPDG AGKTTLIRLM
TALMLPDAGS VEVLGYDTRS DPAGIQASIG YMPQRFGLYE DLSVQENLDL YADLRGLPKS
ERSRTFGELL EFTDLARFTT RLAGKLSGGM KQKLGLACAL LRKPRLLLLD EPGVGVDPIS
RRDLWKMVEN LKAEGIGVVW STAYLEEAEA CDHVFLLNQG RLLFSGPPAE MTGRVENRVF
RLSGIRGRRR EKLAHFLEME GVVDGVIQGE AIRLVMKPGL QPFQSREATG AYCAAVTPPR
FEDAFVDMLG GGPGGRSRLA ETQRAFASED GRSVIEARGL TKRFGDFTAA DNITFDIPRG
EIFGLLGPNG AGKSTTFKML CGLLTPTAGD GRVAGFDLRR DAPAARNRLG YMAQKFSLYG
DLSVIQNLNF FAGVYGLAGA RKRERIALMG EIFDFRSVLD MSAKDLPLGV KQRLALACAV
LHEPEVLFLD EPTSGVDPIT RREFWTHING LVEKGVTVLV TTHFMDEAEY CDRISLIYRG
RSIALGSPDE MKARIASEDL PDPTMEDAFI ALVQGSEAKD AA
|
|---|
| |