| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4668 |
|---|
| Symbol | |
|---|
| ID | 5319343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 1179501 |
|---|
| End bp | 1180403 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776466 |
|---|
| Product | phosphonate ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_001313398 |
|---|
| Protein GI | 150376802 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3638] ABC-type phosphate/phosphonate transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR02315] phosphonate ABC transporter, ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.621423 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.000827837 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGCG GTTATGGCAG GGTCATACCG ATCAACGGTC CCCCGGAAGA GGAACTGCTG
CCAATGTTTC AGTTGAAGAA CGTAACCCGC CAGTTCGGCA AGAAAACCGC CGTCAGCTCG
GTTACCTTCG ACATTCCGCA GGGCCAGATG GTTGGCATTA TCGGCCGCTC CGGTGCCGGC
AAGTCGACAC TTCTGCGCAT GATAAACCGT CTCGTGGACC CTTCCTCCGG TTCGATCGCC
TTCGGCGAAG CAGAGGTTTC GTCACTAAGG GGGGCGGCCC TGCGCAAATG GCAGCGCGAT
TGCGCCATGA TCTTCCAGCA GTTCAATCTG GTGCCGCGCC TCGATGTGCT GACCAATGTA
CTCCTTGGGC GGCTCAACCA CCGATCCACT GTGTTGAGCG TTTTAAACAT GTTCAGCCGC
GATGAGCGCA TCATGGCGAT CGGCGCACTG GAGCGGCTCG GCATCGAGCA GACCGCACTT
CAGCCGGCCG GCACGCTTTC GGGCGGCCAG CAGCAGCGCG TCGCAATCGC CCGGGCGCTG
ATGCAGCAAC CGAAAGTGCT GCTTGCCGAT GAGCCTATCG CGTCGCTAGA CCCGCTCAAC
GCGAAGATCG TGATGGACGC GCTGCGCGAC ATCAACGAGC GCGACGGCAT CACCGTGATC
ACCAATCTGC ACACGCTGGA TACCGCGCGG AACTATTGCG AGCGGATCAT CGGCATGGCG
CATGGCCGGG TCGTTTTCGA TGGACAGCCG AAGGACCTCA CTTCCGCAGC CGTGGCGCAG
ATTTATGGCG GCGATACCGC GATCGAGGAG TCGATGACCT CGACCAGCAT CAACATCCCC
ACGGAAGCCC CGCGGGAGAC CGCATCGGCC GGCTCGAAGC CGCTGGCACT GGCCGGCCTC
TGA
|
|---|
| Protein sequence | MKRGYGRVIP INGPPEEELL PMFQLKNVTR QFGKKTAVSS VTFDIPQGQM VGIIGRSGAG
KSTLLRMINR LVDPSSGSIA FGEAEVSSLR GAALRKWQRD CAMIFQQFNL VPRLDVLTNV
LLGRLNHRST VLSVLNMFSR DERIMAIGAL ERLGIEQTAL QPAGTLSGGQ QQRVAIARAL
MQQPKVLLAD EPIASLDPLN AKIVMDALRD INERDGITVI TNLHTLDTAR NYCERIIGMA
HGRVVFDGQP KDLTSAAVAQ IYGGDTAIEE SMTSTSINIP TEAPRETASA GSKPLALAGL
|
|---|
| |