Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4652 |
Symbol | |
ID | 5318815 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 1160382 |
End bp | 1161176 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640776450 |
Product | short chain dehydrogenase |
Protein accession | YP_001313382 |
Protein GI | 150376786 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.109281 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0540489 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCACAAG GAACGCCTAT TCCGAAGTCC GTAGCGATCG TCACGGGAGC CGCCGGCGAC ATCGGCCGTG CTATTGCCCG GCGCCTGCGT GACGGACATG ATACCGTCCT GTTAGCCGAC ATCGAGGGCG AGGCGGCCGA GAGAACGGCG CGTGATCTCG GCGGAGCGGA GCGGTTCGTG GCCGTCACCT GCGACGTGAC GGACACCGCA AGCGTATCCG CAATGGCTCG GGCAGCCGCC TCCTTCGGAA CCGTGCGTAC ACTCGTGAAC AATGCGGGCG CTGCGCGCGC CGTCAGCCTG CACGACACGA CGCAGGATAC ATGGCGCGCG GACAATGCGC TCAACCTCGA AGCGGCCTTT CTCTGTTTCA GGGCTGTCGA GGAAATGCTG AAGGAGAGCC GGGGTGCGGT CGTCAACATC GCCTCGGTAA ACGGGATGAA CGTTTTCGGC CATCCCGCCT ACAGCGCCGC CAAGGCTGGC CTTTTGCACC TGACCCGGCT GATCGCCGTC GAATACGGCA AGTTCGGCAT CCGCGCGAAT GCGGTCGCGC CGGCGACGGT GCGCACGCGG GCCTGGGAGG CGCGCGCAGC CGCCAATCCC GATGTCTTCG AAGAGGCGAA GCGCTGGTAC CCCCTGCAGC GCATCGTCGA TCCGCAGGAC GTCGCCGAGG CCGTCCATTT CCTTGCCAGT CCCGCCGCCG GAGCCATCTC CGGCATCTGC CTGCCGGTCG ACTGCGGGCT TACCGCGGGC CATGCCGAAG TCGCCCGGAC CTTCACGCAA TCGATCCACT ACTGA
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Protein sequence | MPQGTPIPKS VAIVTGAAGD IGRAIARRLR DGHDTVLLAD IEGEAAERTA RDLGGAERFV AVTCDVTDTA SVSAMARAAA SFGTVRTLVN NAGAARAVSL HDTTQDTWRA DNALNLEAAF LCFRAVEEML KESRGAVVNI ASVNGMNVFG HPAYSAAKAG LLHLTRLIAV EYGKFGIRAN AVAPATVRTR AWEARAAANP DVFEEAKRWY PLQRIVDPQD VAEAVHFLAS PAAGAISGIC LPVDCGLTAG HAEVARTFTQ SIHY
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