| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4391 |
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| Symbol | |
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| ID | 5318361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 886261 |
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| End bp | 887577 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640776195 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001313128 |
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| Protein GI | 150376532 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.687432 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGGGAT GGCCCCAGGC GAAACCGACT GCACATCGGT CGCTCTCCCG GCATCTGATC
GGCGTCTCGG TTCTTGCGCT CGCCCTCGTG GCGGGCGTCG GCGGCTGGGC CGCGACAACG
GAACTGTCCA GCGCGATCGT CGCCGGCGGC GTCGTGGTCG TCGACGATAA TGTCAAGAAA
GTGCAGCATC TGACCGGCGG CATCGTCGGA GAGCTCCTGG TCAAGGAGGG CGATCGGGTT
GAGGCCGGCC AGGTGCTGAT CCGCCTCGAC GGCACGACGG TACGCGCCAA TCTCGCGATC
ATCGAAGGCA CGCTGGCACA ATTCTATGCC CGCCGTGCCC GGCTGCTGGC CGAACGGATC
GGTGCCGCAT CCTTCGAGAT AGAAGAAGAT CTCGCCGAGT TCATCTCCGG CACGGCGGCG
GAGAAGCTCA TCGACGGCGA ACAGAGGCTC TTCGCGAACC GTCGCTCGGC CCTGTTGGGC
ATGAAGGGTC AGCTCGATTC GAGAAAGGCG CAGCTTGCCG ACGAGACCGA GGGTCTGACG
GTACAGTTGA ACGCGATCGA GGACGCGCTG AAGCTGATCG CGGAGGAACT GACCGGGGTC
GACTCGCTTT TCGGTCAGGG GCTCGTGCCG ATGCAACGCG TTACGACGCT GAAGCGCCAG
CGCGCGGAAC TCGAGGGTGG GCGTGGCCGA CATATCGCGG CCCGCGCCCA GGCGCGCGGC
AAGTCGAGCG AGATCGACCT GCAGATCCTG CAGCTCGATG AGGACCGGCG CACCGAAATT
TCCAAGGAAC TGACCGACGT CGAAGCCAAG ATCGCAGAAT ATGAGGAACG CCGCACGGCG
GCCGCCGACC AGTTGCGCCG CCTCGACATC ACCGCCCCGC TTTCCGGGCG CATCTACCAG
CTGGCAATTC ACACGGTCAA TGGCGTCATC AATCCGGGTG AAACGCTGAT GCTCGTCGTA
CCGGAGGTCG ACGACCTGAC CGTCGAGGCG AAGGTAGCGA CCCATGACAT CGACCAGATC
CGTGTCGGCC AATCGGTTGA AATCCGCTTC AGTGCCTTCA ATCAGCGCAC CACCCCTGAA
GTGGAGGCCG AAGTGGTGAC GGTCGCGCCG GATCTCGTCA CCGACGAGCG CACCGGAGCC
AGCTACTATC CCCTGCGCAT TCGCCCGAAG ACGGAGAGCC TCGCCAAGCT GAAGGGGCTT
TCGCTCTATC CGGGCATGCC GGCGGAAGTG TTCATCAAGA TCGCCGACCG TACGGTGATC
TCCTATTTGA CTAAGCCGCT CACGGATCAG ATGCGGCATG CCTTCCGGGA AGATTGA
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| Protein sequence | MRGWPQAKPT AHRSLSRHLI GVSVLALALV AGVGGWAATT ELSSAIVAGG VVVVDDNVKK
VQHLTGGIVG ELLVKEGDRV EAGQVLIRLD GTTVRANLAI IEGTLAQFYA RRARLLAERI
GAASFEIEED LAEFISGTAA EKLIDGEQRL FANRRSALLG MKGQLDSRKA QLADETEGLT
VQLNAIEDAL KLIAEELTGV DSLFGQGLVP MQRVTTLKRQ RAELEGGRGR HIAARAQARG
KSSEIDLQIL QLDEDRRTEI SKELTDVEAK IAEYEERRTA AADQLRRLDI TAPLSGRIYQ
LAIHTVNGVI NPGETLMLVV PEVDDLTVEA KVATHDIDQI RVGQSVEIRF SAFNQRTTPE
VEAEVVTVAP DLVTDERTGA SYYPLRIRPK TESLAKLKGL SLYPGMPAEV FIKIADRTVI
SYLTKPLTDQ MRHAFRED
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