| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4318 |
|---|
| Symbol | |
|---|
| ID | 5318893 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 815739 |
|---|
| End bp | 816707 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776123 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_001313056 |
|---|
| Protein GI | 150376460 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0871118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0590725 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCC GTGATATCAT GAAATTGGCG GCTGTCGCCG CCGTTCTCGC CGCGACGACC
GCGCTCATGC CGGCGGGCGA CGCCGTGGCC CAGGACAAGA AATTCCGTAT CGGCTTCAGC
CAGGCGACGA CGATCGAGCC GTGGCGGGCG CAGTTCAACA AGGACATCAT CGCCGAAGCG
GCAAAGCATC CGGATGTCGA GCTCATCATA ACCGATGGTG AGGACAGGAC GGAGAAGCAG
GTGGCGGATG TAGAGAACCT CATCCGCCAG GAGGTCGACG CACTGCTCGT ATCACCGAAG
GAATCCGCAG GGCTGACGGG CGTGGTGCAG CAGGCGATCG ACGCCAAGAT CCCGGTCTTC
GTTCTCGACC GCAATGTCGA AACCGACCAG TACACTCAGT TCGTCGGCGG CGACAACAAA
CTGATCGGCC GGGCGGCCGG CGAATATGCG GTGGAGCTTC TGGGCGGCAA GGGCAAGGCG
CAAGGCAACA TCGTCGAGAT ATGGGGCGGC ATGGGCACGC AGCCCGCGCA CGACCGCCAC
GACGGCTTCC ACGAATTCAC CGACAAGGAG CCGGGCATCA AGAACCTGCT CGACAAGCAG
TCGGGCGATT GGAAGCAGGA CCAGGCCTAC AACATCATGG CGACGGCGCT GCGCAACAAC
GAGAAAATCG ATCTCGTCTA CGGCCATAAC GACCCGATGG CCTACGGCGC TTACCTGGCA
GCGAAGGACG CGGGCCGCGA GAAGGAAATC AAGTTCATCG GCATCGATGC CTTGCCGAAC
GAGGGCGTGA CCTGGGTCAG CAATGGAGAA CTGACCGCGA CCTTCCTTTA TGCGACGCCG
GGGGCCGAGG GACTGCGCCA GGCCGTGAAG TTCCTCAAGG GGGAAAAGGT CGAAAAGACC
GTCACGCTCG ACACGCTGAA GGTGACGGAG GAAAACGCCG CCCAGATCAT GAAGGACAAC
GGCCTGTAA
|
|---|
| Protein sequence | MKRRDIMKLA AVAAVLAATT ALMPAGDAVA QDKKFRIGFS QATTIEPWRA QFNKDIIAEA
AKHPDVELII TDGEDRTEKQ VADVENLIRQ EVDALLVSPK ESAGLTGVVQ QAIDAKIPVF
VLDRNVETDQ YTQFVGGDNK LIGRAAGEYA VELLGGKGKA QGNIVEIWGG MGTQPAHDRH
DGFHEFTDKE PGIKNLLDKQ SGDWKQDQAY NIMATALRNN EKIDLVYGHN DPMAYGAYLA
AKDAGREKEI KFIGIDALPN EGVTWVSNGE LTATFLYATP GAEGLRQAVK FLKGEKVEKT
VTLDTLKVTE ENAAQIMKDN GL
|
|---|
| |