Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4035 |
Symbol | |
ID | 5318335 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 495427 |
End bp | 497301 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640775843 |
Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
Protein accession | YP_001312776 |
Protein GI | 150376180 |
COG category | [K] Transcription [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTTTCAC ATTCCGAACA TATCCGCGAA ATTGAGCGCG TTGGCCGTGG CCTTCCGGTC AGCCGCGACG AAACGGTCGT GAAATCCTGG ATGCGCTGCC TCGAGCATCA CCGGCTCGAC CCGGCCCAGA GTTGCGAAGC CTATATCGTG CCTGAAACCC GGCTCAAGGA ACACCGGCAG CAATCGGAGG ACCTGATCGG CATCGCTCGC TCGGGGCTGG AGCACCTGTT CCGCCAGGTT GCCGGGCAGA ACTACGTGCT GCTTCTCTCC GACCGGGAAG GCGTGACCGT GGAGTTCCTT GGAGACCCTC TCTTCAACAA CAGCTTGCGA AAGGCCGGGC TTTATCTCGG CTCGGAGTGG TCCGAATGGC GCGCCGGTAC CTGTGCGGTC GGCGCATGCC TGGAAACGGG AGAGGCGCTG ACGATCCATC AGACCGACCA TTTCGACAAT ACCCACACCC CGCTCTCCTG CACGGCGGCA CCGATTTATG ACAACAAGGG CGAACTCTCC GCGGTGCTGG ATATCTCGCT GCTGAGTTCG CCGATCCTCA AGGCCAGCCA GAACCTCGCG CTGCATCTGG TGACCGCCAC CGTGAGACGC ATAGAGCTTG CCAACCTCAT GGCGCAGGCG CGAAACCAGT GGGTGCTGCG GTTCTCGCGC TCACCCGAAT TTCTCGATGT CGATCCGGAG GCGGCCATCT CGATCGACGG CCTCGGCCGG ATCGCCGGAA TGACGCATGG GGGAGCCAAA ATACTCGCAC GCTCGACCGG GCTGGACTGG CGCGATCCCC GGAAACTGAT CGGCGAGCCG GTGTCACGTT TCTTCGATAT CGAGGTCGAC GATCTTTCCG ACCTCACCCG GCGCCGCCCG ACCCAGGAGC GCCTCGTCTT CGCCCGCGAC GGAAATGCGC TCTTCGCCCA TGCGATCGAG CCGCATTCGA CCGTACGTGC GCCAGTCGTC TCGCGCGAGC AGATTCCGCC GGCCTTGCGG CGGCTCGGCG GCGACGCGCC GGTGATCGCC GCGCTGCAGG CAAGGGCCGC GAAGCTCGCG CGTACCGGGC TGCCGATCCT CGTTCAGGGA GAGACGGGGA CCGGCAAAGA GCATCTTGCG CGCGCTATCC ACGAGGGCAG CGGTCTGAAG GGGCAGTTCG TCGCGATCAA CTGCGCGGCG ATCCCCGAGC AATTGATCGA GAGCGAGCTT TTCGGCTACC TGCCGGGCGC CTTTACCGGC GCTTCGGCGA AGGGGCGCAA GGGCCTGATC GAGCAGGCGG ACGGAGGAAC GCTCTTCCTA GACGAGATAG GCGACATGCC GCTTGCCCTG CAAAGCAGGC TGTTGCGCGT ACTTGCCGAG GGCGAGGTCC TGCCGGTCGG CGGCACCGTG CCGCGAAAGG TCCGGATCCG GGTCGTGTCG GCATCGCACC GGCCACTGCA GACGCTTGTC GCGCAAGGGG CGTTCCGCGA GGATCTCTAT TACCGGCTCA ATGCCGCGAC CCTCTCGATT CCGGCGCTCA GGGACCGGCC GGACTTTGAC TGGATACTCG AACAGCTGCT GAAGCGGCAC GGCGACGGTG AGTTGATATT GTCGGAGGCC GCGCTCGCGG CGCTCAAGGC GCATGATTGG CCGGGAAACA TCCGCGAACT CGACAATGTC GTCGCCGTGG CTGCAGCGCT CGCCGAGAAC GGCGTCGTGG AGATCGGCGA CCTGCCGGAC CACCTCCTGG TGAATGCGGA CACCGTCGGC GGAAGCGAGG CGGGGGCGGC CTTGAGCCTT ATGCTCGCCA CTTGCGACTG GAATATTTCC GAGACCGCCC GCCGGCTGGG GCTCGATCGC TCGACGGTGC ACCGGCAGAT CAAGCGCTAC AGCCTCAAGC GCTGA
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Protein sequence | MFSHSEHIRE IERVGRGLPV SRDETVVKSW MRCLEHHRLD PAQSCEAYIV PETRLKEHRQ QSEDLIGIAR SGLEHLFRQV AGQNYVLLLS DREGVTVEFL GDPLFNNSLR KAGLYLGSEW SEWRAGTCAV GACLETGEAL TIHQTDHFDN THTPLSCTAA PIYDNKGELS AVLDISLLSS PILKASQNLA LHLVTATVRR IELANLMAQA RNQWVLRFSR SPEFLDVDPE AAISIDGLGR IAGMTHGGAK ILARSTGLDW RDPRKLIGEP VSRFFDIEVD DLSDLTRRRP TQERLVFARD GNALFAHAIE PHSTVRAPVV SREQIPPALR RLGGDAPVIA ALQARAAKLA RTGLPILVQG ETGTGKEHLA RAIHEGSGLK GQFVAINCAA IPEQLIESEL FGYLPGAFTG ASAKGRKGLI EQADGGTLFL DEIGDMPLAL QSRLLRVLAE GEVLPVGGTV PRKVRIRVVS ASHRPLQTLV AQGAFREDLY YRLNAATLSI PALRDRPDFD WILEQLLKRH GDGELILSEA ALAALKAHDW PGNIRELDNV VAVAAALAEN GVVEIGDLPD HLLVNADTVG GSEAGAALSL MLATCDWNIS ETARRLGLDR STVHRQIKRY SLKR
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