Gene Smed_4012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4012 
Symbol 
ID5318292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp468423 
End bp469319 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content61% 
IMG OID640775820 
ProductLysR family transcriptional regulator 
Protein accessionYP_001312753 
Protein GI150376157 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGTGA CACTTCGCCA GTTGCAGGCA TTTATTGCCG TGGCCGAACT CGGGCGTTTC 
CATCTGGCGG CGGATCACCT CGGACTTACG CAATCGGCGA TCAGCATTCT GATCAGAGAT
CTGGAAGCCG TCCTCAAGCA CCGCTTATTC GACCGGCACA CGCGCATGGT CAGCCTTACG
ACGGCCGGAG CGGAGTTTCT GCCGCAGGCC CGCAAGATCA TGTCGGACCT CGAGATCGCA
GTCACGAACG TCCACGAGCT GGCGAACCTG CAGCGCGGCC GGGTTACCAT TGCGGCTGCG
ATCGTGCTCG CTGCGACCTT GCTGCCTCCG GTCATCGCGC GGTTCGTCAA GCGATATCCC
GACATACAGG TGCAGGTACG GGACATGCCG GAGGAGGAGA TCCGGTCGGC GTTGAAACGA
AACGAGGCGG ACCTGGGCAT CGGCACCGTT TCCGCCGACG ACCCGGAGAT TCAGGCCAGC
GTGCTCATGC GTGACCAACT CACACTGATT TGCCGCTCCG ACCATCGCTT CGCAAGGGCG
CCGCAGGTGA GCTGGGCGAA TCTTGCCGGC GAGGCTCTGA TCGGTCTTGC AAAGGACAAC
CCCTTGCGCG GACTCGTCGA TCACGCGCTG ATCGCCTCCG GAGTCGAGGT GAAGACGAGA
TACGAGGTGC GGTTCTCAAC GACGGCGATC AGCATGGTGG CGGAAGGCCT TGGCATAGCG
ATCCTTCCGG AAAACTCACG TCAACTCACC ACGAATGTGG ACGTGCGGAT CGTCGACCTC
GTCGATCCCG TCATCAGCCG CAACATCTCC ATTCTGCAGT ACCGGCAACC GATGCTCTCG
CCGGCGGCGG CGAAGATGAA GGAGTTTCTT ATGGGAGCGA GCCGCAAGCC CTCGTGA
 
Protein sequence
MNVTLRQLQA FIAVAELGRF HLAADHLGLT QSAISILIRD LEAVLKHRLF DRHTRMVSLT 
TAGAEFLPQA RKIMSDLEIA VTNVHELANL QRGRVTIAAA IVLAATLLPP VIARFVKRYP
DIQVQVRDMP EEEIRSALKR NEADLGIGTV SADDPEIQAS VLMRDQLTLI CRSDHRFARA
PQVSWANLAG EALIGLAKDN PLRGLVDHAL IASGVEVKTR YEVRFSTTAI SMVAEGLGIA
ILPENSRQLT TNVDVRIVDL VDPVISRNIS ILQYRQPMLS PAAAKMKEFL MGASRKPS