Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3977 |
Symbol | |
ID | 5318110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | - |
Start bp | 428287 |
End bp | 429192 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640775786 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_001312719 |
Protein GI | 150376123 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCCTCA GAATGATCGC CGAAGAGAAG GTGGGTGTGT TTTTCGGGGA GCCGGAATCT CCTTGTCTGG TGGCGCGGCC GGTTCATGCG GCGAAATTTT CAGTGACCCG TCTGCAGTGC CGCCTGGACG GCAGGGCCAG CCGGTTGGTA AGGCTGCCGG CTGACGATGC CTATTTCCTC ATGCTCTATC TTGATGATGC GCTTCATCGC GATGTTGCCG GCGACGGCAC AGAGTGCGAG GTGCGGCGAT ACCGCGAGGG TTCCGTCTGT CTCGTAGACC TGACGCATGG CGCGAGCATC CGGCTCGTGA GCGACCTCGA TTCGCTGGCC TTCTATATGC CGCGAGACCT CTTTCGCGAA GTATCCAAAG TCGCGAATGC CCCCCGGGCA ACCGGGCTCA GGTGCCGAAG GGGCGAGGAC GATGACGTCA TGCGAAATCT GGGCACCGCC CTGCTTCCCT TCTTCGACGA ACAGGGCCGC GGCCAAAATG CAGTCCTCCA GCATATTGCA ATCGCAGTCT GTGCGCACCT GCTTCACTCC TATACCGATC CCGGCGAGGC TCGCGGCGGC GTTGCGGGCC TGTCTGTATG GCAGGAAAAG GCCGCCAAGG ACTTCATGAT CGAGCATTTT GCCGAAGACT TCTCGTTTGC GGCCGCGGCC GCCGCGGCCG GTCTGTCCAA GCGGGACTTC ATCAATGGCT TCAGCGACGT TGCCGGCTTG ACCCCGTCCC AGTGGCTGAT GCGTCACAGG ATCGTCCGGG CGAAACAATA CCTGACCTCA CGCGCCTTGA CGTTGAGCGA GGTGGCGAAG CGCTGCGGCT TCAGCGACGT GGATCAATTC GACCGTGCCT TTCGCAGAGC CACGGGAACC TCTCCTTCCG ATTGGCGCGG ACGATGGCTC AACTAA
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Protein sequence | MSLRMIAEEK VGVFFGEPES PCLVARPVHA AKFSVTRLQC RLDGRASRLV RLPADDAYFL MLYLDDALHR DVAGDGTECE VRRYREGSVC LVDLTHGASI RLVSDLDSLA FYMPRDLFRE VSKVANAPRA TGLRCRRGED DDVMRNLGTA LLPFFDEQGR GQNAVLQHIA IAVCAHLLHS YTDPGEARGG VAGLSVWQEK AAKDFMIEHF AEDFSFAAAA AAAGLSKRDF INGFSDVAGL TPSQWLMRHR IVRAKQYLTS RALTLSEVAK RCGFSDVDQF DRAFRRATGT SPSDWRGRWL N
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