| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3943 |
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| Symbol | |
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| ID | 5318524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 392457 |
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| End bp | 394262 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640775753 |
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| Product | Pyrrolo-quinoline quinone |
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| Protein accession | YP_001312686 |
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| Protein GI | 150376090 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.237421 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGAC TTCTTACTAT GCTTGCCTTC ATGTCGATAG GCGGCGGTGC GCAGGTCGCA
TTCGCCAACG ATGATTTGCA GAAGCTCATC GATGACCCCA ACCAATGGGC GATCCAGACC
GGCGACTATG CCAACCTGCG CTATTCCAAG CTTGACCAGA TCAACAAGGA CAACGTAGGC
AAACTCCAGG TCGCCTGGAC CTTCTCGACC GGCGTTCTGC GCGGTCACGA AGGTTCGCCG
CTTGTGATCG GCGACATGAT GTATGTGCAT ACGCCGTTCC CGAACACCGT CTATGCGCTG
GATCTCAGCA AAGACGGCCA GATCGTCTGG AAATACGAGC CGAAGCAGGA TCCGAACGTG
ATCCCGGTGA TGTGTTGCGA TACGGTCAAT CGCGGCGTCG CCTATGCGGA TAACAAGATC
TTTCTGCATC AGGCCGATAC GACGGTCGTG GCACTCGATG CCAAGACCGG CAAGGTGGCA
TGGAGCGTCA AGAACGGCGA TGCGACCAAG GGCGAGACCA ACACCGCCAC CGTCATGCCT
GTCAAGGACA AGGTTCTCGT CGGCATATCC GGCGGCGAGT TCGGCGTTCG CGGCCATGTG
ACCGCTTATT CGATCGCGGA TGGCAAGCTC CTGTGGCGCG CTTACTCCAT GGGGCCGGAC
AGCGACACGC TGATGAATCC TGAAAAGACG ACCCACCTTG GCAAGCCGGT CGGAAAGGAC
TCAGGTCTGA CGACCTGGGA GGGCGATCAG TGGAAGATCG GGGGCGGTAC GACCTGGGGC
TGGTACTCCT ATGATCCCGA ACTCAACATG GTGTATTACG GAACCGGCAA CCCATCCACC
TGGAACCCGA CCCAGCGGCC TGGCGACAAT CGCTGGTCGA TGACGGTCTT CGCGCGGGAC
GTCGATACCG GGGAGGCCAA ATGGGTCTAC CAGATGACGC CCCACGACGA ATGGGACTAT
GACGGCGTCA ACGAGATGAT CCTGACCGAA CAGCAGATCG ACGGCAAGGA TCGCAAACTG
CTGACCCACT TCGACCGCAA CGGCTTCGGC TATACGATGG ATCGCGTCAC GGGCGAGTTG
CTCGTAGCGG AGAAATACGA TCCCACCGTC AACTGGGCGA CTGAAGTGGT CATGGACTCC
AAGTCGGAAC AGTTTGGCCG GCCGCAAGTC GTAGCTCAGT ATTCGACTGA GCAGAACGGC
GAAGACACCA ACACGACCGG CGTCTGCCCG GCCGCTCTCG GTACCAAGGA CCAGCAGCCG
GCGGCCTATT CGCCGAAAAC CGAGCTGTTC TACGTGCCTA CCAACCACGT CTGCATGGAC
TACGAACCCT TCCGGGTAAG CTACACCGCC GGCCAGCCCT ATGTAGGGGC CACGCTGTCG
ATGTACCCGC CGAAGGATAG CCATGGCGGC ATGGGCAACT TCATCGCCTG GGACAACAAG
GAAGGCAAAA TCAAGTGGTC CCTACCGGAG CCGTTCTCGG TCTGGTCCGG CGCTCTGGCG
ACAGCCGGCG ACGTGGTCTT CTACGGAACG CTCGAAGGTT ATCTGAAGGC GGTCGACGCC
GCGACCGGCA AGGAGCTCTA TCGCTTCAAG ACGCCTTCCG GAGTGATTGG CAACGTGATG
ACCTATGCCC GCGAAGGCAA GCAGTACGTG GCCGTCCTCT CGGGTGTTGG GGGCTGGGCC
GGAATCGGTC TGGCAGCGGG CCTGACCAAC CCAACTGAAG GTCTCGGAGC CGTTGGCGGC
TACTCGGCCC TCAGCAACTA CACCGCGCTC GGCGGTACGC TCACCGTGTT CAAGCTGCCG
GAATAA
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| Protein sequence | MKRLLTMLAF MSIGGGAQVA FANDDLQKLI DDPNQWAIQT GDYANLRYSK LDQINKDNVG
KLQVAWTFST GVLRGHEGSP LVIGDMMYVH TPFPNTVYAL DLSKDGQIVW KYEPKQDPNV
IPVMCCDTVN RGVAYADNKI FLHQADTTVV ALDAKTGKVA WSVKNGDATK GETNTATVMP
VKDKVLVGIS GGEFGVRGHV TAYSIADGKL LWRAYSMGPD SDTLMNPEKT THLGKPVGKD
SGLTTWEGDQ WKIGGGTTWG WYSYDPELNM VYYGTGNPST WNPTQRPGDN RWSMTVFARD
VDTGEAKWVY QMTPHDEWDY DGVNEMILTE QQIDGKDRKL LTHFDRNGFG YTMDRVTGEL
LVAEKYDPTV NWATEVVMDS KSEQFGRPQV VAQYSTEQNG EDTNTTGVCP AALGTKDQQP
AAYSPKTELF YVPTNHVCMD YEPFRVSYTA GQPYVGATLS MYPPKDSHGG MGNFIAWDNK
EGKIKWSLPE PFSVWSGALA TAGDVVFYGT LEGYLKAVDA ATGKELYRFK TPSGVIGNVM
TYAREGKQYV AVLSGVGGWA GIGLAAGLTN PTEGLGAVGG YSALSNYTAL GGTLTVFKLP
E
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