| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3398 |
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| Symbol | |
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| ID | 5324282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 3603392 |
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| End bp | 3606538 |
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| Gene Length | 3147 bp |
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| Protein Length | 1048 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640792349 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001329054 |
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| Protein GI | 150398587 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.392181 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAGTT TTTTCATAGA CAGGCCTATC TTTGCCTGGG TGGTGGCGAT CTTCATCATG
ATCGCCGGCA TCATCGCGAT CCCGCTATTG CCGGTGTCGC AGTATCCGGA TGTCGCGCCC
CCGCAGATAT CGATCAACAC GAACTATCCC GGCGCCTCGT CGCAGGACAC CTATCAGAGC
GTGACCCGTC TGATCGAGGA CGAGCTGAAC GGCGTCGAGG GGCTGCTTTA CTTCGAGTCT
TCGACCAGTG CCTCCGGCTC GGTCTCGATC GACGCCACCT TCCAGCCCGG CACCGATCCG
AGCCAGGCTT CGGTGGACAT CCAGAACCGG GTGCAGCGCG TCGAGCCGCG CCTGCCTGAC
CCCGTCAGGC AGCAAGGCGT ACAGGTGGAC GAGGCCGGCG CCGGCTTCCT GCTGATCATC
TCGCTGACTT CGACCGACGG CTCGATGGAC GCCATCGGGC TTGGCGATTA CCTCAGCCGC
AATGTGCTCA GCGAGATCCA GCGCGTGCCC GGCGTCGGAC GCGCCCAGCT CTTTGCGACC
GAGCGCTCGA TGCGCGTCTG GCTCGATCCC GACAAGATGC TCGGCCTCAA TCTGACCGCG
GCTGACGTCA CCGCGGCGAT CCAGGCTCAG AACGCCCAGA TCGCCTCCGG CTCGATCGGC
GCCCAGCCGA ATCCGATCAC GCAGCAAGTC ACCGCACCGG TCGTCATCAA GGGCCAGCTT
TCGAGCCCCG AGGAATTCGG TGCGATCGTA CTCCGGGCGA ATGCCGACGG CTCCGCCGTG
CGGCTGCGCG ACGTTGCGCG TCTCGAGATC GGCGGCGAAA GCTACACCTT CTCGACCCGC
CTCAACGGCA GCCCCTCGGC GGCCATCGCC GTGCAGCTCT CGCCGAGCGG CAATGCGATG
TCGACCTCGG CGGCGATCAA GACACGCATG GACGAGCTCG CGGCGTTTTT CCCCCAAGGG
CTCGAATACT CGATCCCCTA TGACACCTCG CCCTTCGTCG CGGTGTCGAT TGAGAAGGTG
CTGCACACCC TTGTCGAGGC CGTCGGCCTC GTATTCCTGG TGATGTTCCT CTTCCTGCAG
AACGTCCGCT ATACGCTCAT CCCCACCATC GTGGTGCCGG TCGCCCTGCT CGGCACCTGC
GCGGTCATGC TGGCGATGGG CTTCTCCATC AACGTGCTCA CGATGTTCGG CATGGTGCTG
GCGATCGGTA TCCTCGTCGA CGATGCGATC ATCGTGGTCG AGAACGTCGA ACGCATCATG
TCGGAGGAAG GGCTGACGCC GAAGGATGCA ACCCGGAAGG CGATGAAGCA GATCACCGGA
GCGGTGATCG GCATCACGCT GGTTCTGGCT TCGGTGTTCA TTCCGATGGC CTTCTTCCCC
GGCGCCGTGG GCGTGATCTA TCGCCAGTTC AGCCTGACGA TGGTCGTCTC GATCCTGTTT
TCGGCGCTCC TCGCATTGTC GCTGACACCG GCACTCTGCG CGAGCTTCCT CAAGCAGGTA
CCGAAGGGGC ACCATCATGC CAAGCGCGGC TTCTTCGGTT GGTTCAACCG CGGTTTCGAC
CGGACGTCGC ACGGCTACAC GCGTTTCGTC GGAAGCGTCA TCAGGCGCAC GGGCCGCTTC
ATGATCATCT ATCTGATCCT GCTTGCAGCA ATGGCCTGGG CATTTATCCG GCTGCCCTCG
TCCTTCCTGC CGGACGAGGA CCAGGGCTTT GTCATCGTCA TGATGCAATT GCCGTCGGAA
GCGACGGCAA ACCGCACCAC GGAGGTGATC GAGCAGACCG AGAAGATCTT CGGCCAGGAA
CCGGCGGTCG ACACGATCGT GGCGATCAAC GGTTTCTCCT TCTTCGGCAG CGGGCAGAAT
GCGGGTCTTG CATTCGTGAC GCTGAAGGAC TGGAGCGAAC GCGACGCCGA CAATGCAGCG
CAGTCGATCG CCGGCCGCGC GACGATGGCC ATGAGCCAGA TCAAGGATGC GATCAGCTTC
GCGCTGTCGC CTCCGGCGAT CCAGGGCCTC GGAACGACAG GCGGGTTTTC CTTCCGCCTT
CAGGACCGTG CGGGTCTCGG CGAAGCGGCG CTGGCAGAAG CGCGCGACCA GCTTCTCGGC
CTCGCCTCCC AGAGCAAGAT CCTGACCGGC GTCCGTTTCG AGGGCATGCC CGATGCGGCG
CAGGTCAGCG TCGATATCGA CCGCGAGAAG GCCAATACCT TCGGCGTGAC CTTTGCCGAT
ATCAACTCGA CCATCTCGAC CAATCTCGGC TCGTCCTACG TCAACGACTT CCCGAATGCC
GGCCGCATGC AACGCGTGAC GGTGCAGGCG GACGAAACGA AGCGCATGCA GCCGGCGGAC
CTCCTGAACC TGAACGTCCG CAATTCCAAC GGCGGCATGG TTCCGCTCTC GGCCTTCGCG
AATGTGGAAT GGGTCAAGGC GCCGACGCAG ACGGTCGGCT ACAACGGCTA TCCGGCAGTG
CGCATCAGCG GCGAGGCCGC TCCGGGCTAT TCCTCCGGCG ATGCCATTGC CGAGATGGAG
CGTCTGGTAG CCCAGCTTCC GGCTGGTTTC GGCTATGAAT GGACGGGGCA GTCGCTACAG
GAAATCCAGT CGGGGACGCA GGCGCCGCTC CTTATCGCGC TCTCCTGCCT GCTCGTCTTC
CTGTGCCTGG CCGCGCTCTA TGAGAGCTGG TCCATTCCAG TCTCGGTCAT CATGGTCGTG
CCGCTCGGCG TCATCGGCGC CGTGCTCGCC GTGACGATGC GCGACATGCC GAACGACGTC
TACTTCAAGG TCGGCCTGAT CGCGATCATC GGGCTTTCGG CGAAGAACGC GATCCTGATC
ATCGAATTCG CCAAGGAACT CCGCGACCAG GGTAAATCGC TTATCGATGC GACACTGGAA
GCTGCACATC TGCGCTTCCG GCCGATCCTG ATGACCTCGC TCGCCTTCAC CCTCGGCGTT
CTGCCGCTGG CGATCGCGAC AGGCGCAAGT TCCGGCAGCC AGCGCGCCAT TGGCACCGGC
GTCATGGGCG GCATGATCTC GGCGACGGTA CTGGCGATAT TCTTCGTCCC CGTCTTCTTC
GTGTTCGTCA TGAAGATCTT CGAACGCGGA AGAGCGGCGC CCGAGCCGGC CAAGCAGGCA
TCCGAAACCG TCAGCCCCGC CGAGTGA
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| Protein sequence | MPSFFIDRPI FAWVVAIFIM IAGIIAIPLL PVSQYPDVAP PQISINTNYP GASSQDTYQS
VTRLIEDELN GVEGLLYFES STSASGSVSI DATFQPGTDP SQASVDIQNR VQRVEPRLPD
PVRQQGVQVD EAGAGFLLII SLTSTDGSMD AIGLGDYLSR NVLSEIQRVP GVGRAQLFAT
ERSMRVWLDP DKMLGLNLTA ADVTAAIQAQ NAQIASGSIG AQPNPITQQV TAPVVIKGQL
SSPEEFGAIV LRANADGSAV RLRDVARLEI GGESYTFSTR LNGSPSAAIA VQLSPSGNAM
STSAAIKTRM DELAAFFPQG LEYSIPYDTS PFVAVSIEKV LHTLVEAVGL VFLVMFLFLQ
NVRYTLIPTI VVPVALLGTC AVMLAMGFSI NVLTMFGMVL AIGILVDDAI IVVENVERIM
SEEGLTPKDA TRKAMKQITG AVIGITLVLA SVFIPMAFFP GAVGVIYRQF SLTMVVSILF
SALLALSLTP ALCASFLKQV PKGHHHAKRG FFGWFNRGFD RTSHGYTRFV GSVIRRTGRF
MIIYLILLAA MAWAFIRLPS SFLPDEDQGF VIVMMQLPSE ATANRTTEVI EQTEKIFGQE
PAVDTIVAIN GFSFFGSGQN AGLAFVTLKD WSERDADNAA QSIAGRATMA MSQIKDAISF
ALSPPAIQGL GTTGGFSFRL QDRAGLGEAA LAEARDQLLG LASQSKILTG VRFEGMPDAA
QVSVDIDREK ANTFGVTFAD INSTISTNLG SSYVNDFPNA GRMQRVTVQA DETKRMQPAD
LLNLNVRNSN GGMVPLSAFA NVEWVKAPTQ TVGYNGYPAV RISGEAAPGY SSGDAIAEME
RLVAQLPAGF GYEWTGQSLQ EIQSGTQAPL LIALSCLLVF LCLAALYESW SIPVSVIMVV
PLGVIGAVLA VTMRDMPNDV YFKVGLIAII GLSAKNAILI IEFAKELRDQ GKSLIDATLE
AAHLRFRPIL MTSLAFTLGV LPLAIATGAS SGSQRAIGTG VMGGMISATV LAIFFVPVFF
VFVMKIFERG RAAPEPAKQA SETVSPAE
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