Gene Smed_3147 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3147 
Symbol 
ID5324026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3298164 
End bp3299198 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content59% 
IMG OID640792095 
Productaliphatic sulfonate ABC transporter periplasmic ligand-binding protein 
Protein accessionYP_001328806 
Protein GI150398339 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID[TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACACC TAATTGCCGC CATCCTTGCC GCGACGCTTT CGACAGGCAC CGCCTGGGCC 
GAGGATCCCT TGCCCATCCG CATCGGCGCC GCTTCGGCTG TCGATCATGC TCCGGTCTTC
ATCGGGGTCG AGAAGGGAAT ATTCGCCGCA CATGGCCTGG ATGCGGACGT GGTTATGTAT
CAGTCCGGCG TTGATATGGT GAACGGGCTC ATGAACGGGG CGCAGGAAGT CAATGTCATG
GGCTCGGTCC CGTTCCTGTC CGGGATTTCA CGCGGGTTTC CCCTTGTCCT GATCGGGCAT
TTGCACGGTG ACCCGAACCG TACCGACTAT TCCGACAACC AATCCGTTAT CGCCTCGGCT
GAATCGGGCG TCAAAAAAGC CGATATTGCG GCGCTTGCCG GGAAACGGAT CGGCTTGCCG
CGCGGTACGG GTGCGGAGGG TTATCTGTTC GGGTTACTGA AATCGGCAGG GCTCAGCGAG
AAGGATGTGC AACTGGTCAA TGTGCAGCCG GCAGAGCTGG TGACTGCGCT GACTCAGGGG
GACGTTGATG CCATTTCGAT CTGGCAGCCC TGGGCCGCGA CCGCGCTGAC GAAAATCGAA
GGAACGGTTG AGGTCGTCGC GGGGGGCTGC GCGGGTTGCT ATGATCCCGG CACGATCCTG
ACAACCCGCA TGGTTGCCAC GGAAAAGCCT GAGGAGCTGA AGCGCTTCAT GGCTGCCTTC
GCCGAAGCGC AGCAATGGGT GCGTCAGAAC CCCGATAAGG CGGCTGAGAT AAACACCCGC
TGGATTTCGG GCGTCGATGC CGAAACCATG GCTCTAGCAC TGAAGAATAT CCCGCTGGAT
TCGCGCATTT CGGCGCATAC CGCCGCAATG TATCAGGAAA AGACATTGCC GTTTCTGGTT
GGTCTCGGCC GGGTCGAAAA AGTATTCGAT CCATCGGATT CCATCGACAC AAGCTTTCTG
AAGGCCGCGC AGGAAAGCAA TCCCAAGGCA TTTTCGGATC TGGAACCTAT CCCGGAAGAC
ATTCAGGTCA AGTGA
 
Protein sequence
MKHLIAAILA ATLSTGTAWA EDPLPIRIGA ASAVDHAPVF IGVEKGIFAA HGLDADVVMY 
QSGVDMVNGL MNGAQEVNVM GSVPFLSGIS RGFPLVLIGH LHGDPNRTDY SDNQSVIASA
ESGVKKADIA ALAGKRIGLP RGTGAEGYLF GLLKSAGLSE KDVQLVNVQP AELVTALTQG
DVDAISIWQP WAATALTKIE GTVEVVAGGC AGCYDPGTIL TTRMVATEKP EELKRFMAAF
AEAQQWVRQN PDKAAEINTR WISGVDAETM ALALKNIPLD SRISAHTAAM YQEKTLPFLV
GLGRVEKVFD PSDSIDTSFL KAAQESNPKA FSDLEPIPED IQVK