| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3108 |
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| Symbol | thiP |
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| ID | 5323987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 3253909 |
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| End bp | 3255504 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640792058 |
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| Product | thiamine transporter membrane protein |
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| Protein accession | YP_001328769 |
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| Protein GI | 150398302 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1178] ABC-type Fe3+ transport system, permease component |
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| TIGRFAM ID | [TIGR01253] thiamine ABC transporter, permease protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCCG GGGGTTTCGC CCTTGGCGGC GTTCTGCTTT TCATCGGCCT CGCAGCCGGG
TCGCTGCTCG CCCAATCGAC CGGCGGCAAC GATGCCGGTC CGTTCCTTGA CGCCTATATC
TGGCGCATAA CACGCTTCAC ACTGCTGCAG GCAGGCCTTT CCACGCTCTT TTCCGTGCTG
CTCGCCATAC CGGTGGCCCG CGCACTTGCC CGCCAGGCTT CGTTCCCCGG CCGCATCTGG
ATGTTGCGGC TGCTGGCGCT GCCTCTCGGC CTTCCGGCCC TCGTCGGCGC TCTCGGCCTC
ATTGAGATCT GGGGACGACA GGGGCTTTTG AACAGGGTGC TCGCGGCGGC CGGGCTGGAG
CAACCGGTCA GCATCTATGG GCTCTCCGGC ATTCTCATCG CCCATGTCTT TTTCAACATG
CCGCTCGCCG CCCGTCTGAT GCTTGCCGGC ATCGAGCGCA TTCCGGCCGA GTATTGGCGC
ACCTCCGCCA ATCTCGGCAT GAGCGCCTTC GCCATCTTCC GCTTCATCGA GTGGCCGGTG
ATCCGCGGAT TGCTTCCCGG CATCGCCGGA CTCGTCTTCA TGCTCTGCGC GACCAGCTTC
ACACTCGTGC TGACGCTTGG TGGCGGTCCG GCCGCCAGCA CCATCGAAGT GGCCATCTAT
CAGGCGCTGC GCTTCGATTT CGACCCGCCG CGAGCGATCG CCCTGGCGGC ACTTCAGGTC
GCCCTTACAG GTGCGCTGCT TCTCGTCCTG AAATTGATCG CGCCGCCGCC GCCGGAGGGT
GAGACGAGCG GCAAGTCGAT CCGGCGTTCC GACGGTGCAA GCAGTCTTTC CCGGCTTGCC
GACCGGGTTT GGCTGGTCCT CGCCGCCGGC CTGGTAGGCC TGCCGTTTGC AGCCATCGCC
TATGCCGGTT CGAAGGCTGA TCTGTTCCGG CTTCTGAGCG AGCCGGTGTT CCATCGGGCG
CTCGCGATGA GCGCGACCAT CTCGGTACTC TCCGCCGTCA TTTCGGTCGC TGTGACGGCG
CTGATGATCC GCACCGAAAG TCTCGCACTG GCGCAGCGGC GCCCCGGAAT GACGGCACGT
TTTTTCGCCG GCGCTATCGG TGCGAGCACA TCCTTTATCC TGCTGATACC ACCCGTCGTG
CTCGGCGCCG GGTGGTTCCT GCTGTTGAGG CCTTTCGGCG ACGTCGCCCG CTTCGCCCCT
GCCGTCGTCG TCGCCATCAA CGCGCTCATG GCGCTTCCCT TCGTTCACCG GGTGCTCGCA
CCCGCCATGG CGACGCACGC CGTGCGCACC GGTCGCCTTG CCGCAAGCCT TGGAATCGCC
GGCTTTCAAC GCCTGCTATG GATCGACTGG CCTGGCCTGC GCAAACCCCT TTTCGTCGCA
TTCTCCTTTG CCATGGCCCT GTCCCTGGGG GATCTGGGAG CGGTCGCACT TTTCGGCTCG
CAGGACATGG TAACCCTCCC TTATCTGCTC TATAGCCGGA TGGGCAGCTA TCGCACCGCC
GATGCGGCCG GGCTCGCGCT GTTCCTAGGC CTCCTCTGCC TGGTCCTGAC GGTGCTCGGC
ACGGCGGGAG AAGAGCCTGA AGGTAAAGGC GCATGA
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| Protein sequence | MAAGGFALGG VLLFIGLAAG SLLAQSTGGN DAGPFLDAYI WRITRFTLLQ AGLSTLFSVL
LAIPVARALA RQASFPGRIW MLRLLALPLG LPALVGALGL IEIWGRQGLL NRVLAAAGLE
QPVSIYGLSG ILIAHVFFNM PLAARLMLAG IERIPAEYWR TSANLGMSAF AIFRFIEWPV
IRGLLPGIAG LVFMLCATSF TLVLTLGGGP AASTIEVAIY QALRFDFDPP RAIALAALQV
ALTGALLLVL KLIAPPPPEG ETSGKSIRRS DGASSLSRLA DRVWLVLAAG LVGLPFAAIA
YAGSKADLFR LLSEPVFHRA LAMSATISVL SAVISVAVTA LMIRTESLAL AQRRPGMTAR
FFAGAIGAST SFILLIPPVV LGAGWFLLLR PFGDVARFAP AVVVAINALM ALPFVHRVLA
PAMATHAVRT GRLAASLGIA GFQRLLWIDW PGLRKPLFVA FSFAMALSLG DLGAVALFGS
QDMVTLPYLL YSRMGSYRTA DAAGLALFLG LLCLVLTVLG TAGEEPEGKG A
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