| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3102 |
|---|
| Symbol | |
|---|
| ID | 5323981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3247507 |
|---|
| End bp | 3248316 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640792052 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001328763 |
|---|
| Protein GI | 150398296 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATAC GTCGCCACGT GCTTGCGGGC ATTGCCGCAG TTCTTGCCGC TCCACTCGCA
GTCTCCGCGC CCGCTTTCGC AAGCGACCTG CCCGACCTCG GCGGCAAGAC GGTCGTCGTG
GTGACCGAGA ACGCCTACCC CCCGCTGCAG TTCGTGGATC CCAAATCCGG CCAGGCCATC
GGCTGGGAAT ATGACGCGAT GAACGAGATC GCCAAGCGGC TGAACTTCAA GGTCGAATAT
CAGAACACCA GCTGGGATGC GATGATCCAG GCCGTTTCCG ACGGTCAGTA CCAGATCGGA
ATGACCGGGA TCACCATCAA GGACGACCGC AAGGAAAAGG TCGATTTTTC CGATCCCTAC
CTGCGATCGG AGCAGTTCAT GCTGGTGCGG GGCGACGAGA CCCGCTTTAG CGATGCGAAG
AGTTTCGCGG CGCTTGAAAG CGGGTTGATC GGCGCTCAGC CCGGTACCTC GCCGTTCTAC
ACGGCAGTTT ACGAAATTCT CGATGGCAAC GAGCAGAACC CGCGGATCAA GCTGTTCGAG
ACCTTCGGTG CGACGGTGCA GGCCCTGAAG GCCGGCGACG TCGATCTGGT CCTGACCGAC
AGCGTTGCGG CCAAGGGCTA TGTCGATTCC TCCGAAGGCC AGCTCAAGGT GGTCGGCGGG
CCGCTCGGCA CCGAGGATTT CGGCTTCATC TTCCCGAAGG GATCGGAGCT TGTGGCGCCG
GTCAATGCCG CCATCAAGGC GCTCAAGGAC GACGGCACCT TGGACGCGCT CAACAAGAAG
TGGTTTCTCG ATTACAAAAT GGGCGGCTGA
|
|---|
| Protein sequence | MTIRRHVLAG IAAVLAAPLA VSAPAFASDL PDLGGKTVVV VTENAYPPLQ FVDPKSGQAI
GWEYDAMNEI AKRLNFKVEY QNTSWDAMIQ AVSDGQYQIG MTGITIKDDR KEKVDFSDPY
LRSEQFMLVR GDETRFSDAK SFAALESGLI GAQPGTSPFY TAVYEILDGN EQNPRIKLFE
TFGATVQALK AGDVDLVLTD SVAAKGYVDS SEGQLKVVGG PLGTEDFGFI FPKGSELVAP
VNAAIKALKD DGTLDALNKK WFLDYKMGG
|
|---|
| |