| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3062 |
|---|
| Symbol | |
|---|
| ID | 5323941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3210288 |
|---|
| End bp | 3211526 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640792012 |
|---|
| Product | Bcr/CflA subfamily drug resistance transporter |
|---|
| Protein accession | YP_001328723 |
|---|
| Protein GI | 150398256 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTCC GGATGAGCGA ACGGCGCACG AGCATCATCG GCGCCTTTCT GGTGGCACTC
GGCCCTATAT CGATGGCGCT CTACACGCCG GCAATGCCGG AGCTCGTGCG TGCCTTCGCC
TCCAGCGAAG CGGCAATCAA GATGACGCTG TCGCTCTATT TCGGCGGCTT CGCCTTCGCT
CAACTCGTTT CGGGCACGCT TTCCGACGTT ATCGGCCGGC GGCGTACAAC GTTGATCTTC
ATGGCGATCT ACCTCGCCGG GAGCCTGATG GCGGCCTTCG CGCCCTCGAT CCCGGTGCTG
CTCGCCGGCC GCCTGGTGCA GGGGATCGGC GCCTCAGTCG GAATGACGGT ATCGCGCGCG
CTCGTTCGCG ATCAGTTCAC CGGGACGACT GCGGCCCGGA TCATGAACAT GATCGGCATG
ATGCTGGCGC TCGGGCCCGC GGTCTCACCG ACCCTCGGCG GCATCGCGCT CGGCCTTTTC
GGCTGGCAGT CGATCTTCCT GCTGATGGTG GGCTTTGCCC TGACGGCCTG CTTGGTCGTG
CAATTCTTCA TGGTGGAAAC CGCGACGCCG GACCGCAGCA AGGGGCACCT CGCACTCATA
TTCGCGGCCT ATTGCCAGCT TATGAGCGAC AGCCGTTTCA TGTCTTCCAC TCTGGTGATC
GCCGGCGCCG TTGGTGCGCT CTATGCCTGG GCCACCATGC TCCCCTTCGT TCTGATCAGC
CAGGTCGGCC TCACGCCCAC AGCGTTCGGC ATCGGCATGC TCATGCAATC CGGCCTGTTT
TTTTCGGGCA CGGTCACGAT GCGCCTCATG ATGCGACGCT TCACCCCGCA GGCACTCGTG
CCCGTCGGAC TCTCATTCAT CGGCGCGGCG AGCCTCGCCC TCGCCTTCAC CATGCATGCG
CTGGAGCCGA CCTTCCTTTC GGTGATGACG CCGATCGGGA TCTATGCTTT CGGCATCGCC
TTTGTCATGC CCTACATGAT GACGGCGGCG TTGGCCCCCT TTCCGCACAT CGCCGGCACC
GCTTCGGCCA TGATGGGCTT CATCCAGATG AGTGCCGGGC TTCTCGGCGG CGCACTTGCT
GCCCTCGTCG GCGTGCCCGC CTTGGCGCTC GGCACGATCA TCCCGAGCTT CGGCCTTGTC
TCGCTAGCAA GCTATCTCTG GTATCGCAGG GCCGTTCGAC TGAGGCCGCT GGCCGCGCCG
ACGGCCGAGC AAGATCCTAT CGTTCAGGCG GCGGAATGA
|
|---|
| Protein sequence | MTLRMSERRT SIIGAFLVAL GPISMALYTP AMPELVRAFA SSEAAIKMTL SLYFGGFAFA
QLVSGTLSDV IGRRRTTLIF MAIYLAGSLM AAFAPSIPVL LAGRLVQGIG ASVGMTVSRA
LVRDQFTGTT AARIMNMIGM MLALGPAVSP TLGGIALGLF GWQSIFLLMV GFALTACLVV
QFFMVETATP DRSKGHLALI FAAYCQLMSD SRFMSSTLVI AGAVGALYAW ATMLPFVLIS
QVGLTPTAFG IGMLMQSGLF FSGTVTMRLM MRRFTPQALV PVGLSFIGAA SLALAFTMHA
LEPTFLSVMT PIGIYAFGIA FVMPYMMTAA LAPFPHIAGT ASAMMGFIQM SAGLLGGALA
ALVGVPALAL GTIIPSFGLV SLASYLWYRR AVRLRPLAAP TAEQDPIVQA AE
|
|---|
| |