| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2805 |
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| Symbol | |
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| ID | 5323675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 2928501 |
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| End bp | 2931137 |
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| Gene Length | 2637 bp |
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| Protein Length | 878 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640791750 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
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| Protein accession | YP_001328470 |
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| Protein GI | 150398003 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain
[COG3452] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0866778 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCGAC TGTCGCGTCA TCTCGCTCCC AGCTACCTTC CGGCCATCAT CGCGGCTGTT
GTGGTAGCGG TCGCAGGAGT TCTCGCCGAC AATCAGAACC GGATCGTTTC GGAAGCGCGA
CAGCGCTCCG AGGTCGCCGA CGCGCTCAAC CCGATACGTT CGCGCCTCGA GAGCAGCGTC
AACGGCAACA TCCAGCTTGT TCGAGGCCTG ATCGCCACGA TCGAAACCGA GCCCGACATG
CAGCAGCAAC GCTTCGGGGA ACTCGCCCGC GGCGTCTTCA GCGAAGGCTC GCTACTCCGC
AATATCGCCG CTGCGCCAGA ACTGGTCGTT GCGATGGTCT ACCCGTTGAA AGGCAATGAG
AAGGCGATCG GTCTCGATTA CCGCGCGAAC GATAAACAGC GCAGTTCCGT GATGCGGGCG
GTGGCGTCGG GAGAGATGGT GCTGGCGGGA CCGGTCGACC TCGTCCAGGG CGGACGCGGG
CTGATCGGCC GCTTTCCCGT GATGACCGCC TCGGACGACG GCAACCGATT CTGGGGCGTG
GTATCGGCCG TGATCGACGT CGATCGCCTC TATCGCGACA GCGGCCTGTC ATCACCAACC
CTCGACATCG ACGTAGCCAT TGTCGGCCGG GACGGGCGGG GACGCGACGG CGCCCATTTT
TTCGGCGACC CCGCAATCTT CGACAACAGC CCCGTCGAGA TGAGCGTATC GCTGCCCGGT
GGTTCCTGGC GCATGGCAGC GATTCCGAAA GGCGGATGGC CGGCGACACC GCGGAATGCC
TGGCAGGTTC GCATCCTCAT CGCTCTCGGC GGCATGATGA TCGTCGCTCC GATGATCGTC
GCCGGTCGCC TCATGGCCGA GCGCCAGGCG AACTTTCGAG CGTTGAGACA GAGCAAGGAT
CAGCTTCAGG AGCTTTCGCA CCGTTTGCGG ATCGCGCTCG ACACTTCGAT GATCGGCGTT
TGGGAGCTCG ATGCCGATAG CGGCAAGCTC CTGTGGGACA GCCGCATGAG GGAGCTCTAT
GGCGTCGGCT CGTCGATGCA CGAGGTCTAT GAGGACTGGA GGAACACGCT GCATCCGGAG
GATCTCGCCC GTGCGGAAGC GGAATTCGAC GCGGCACTCG CCACGGGCGA GGCATATAAT
ACGGAGTTTC GCATCCGTCT TCCGGCCGGC GGAGTCCGCC ACATTCGCGC GATCGGTTCG
ACCTATATCG GCACGAACGG CAGCAGGAAG ATCGTTGGCG TCAACTGGGA CGTGACCGCA
GACGTGGAAA CGCGTGCAAC CCTGTCGGAA GCCAAACGCC TCGCCGAAGC CCACAGCGCC
GAGTTGGAGG CCGCGCGTCA TCGGATGGAA TTCAACGCAT TGCACGATCC GTTGACCGGC
CTGCCGAACC GACGCTTCCT GGACCAGATC CTCCTCGACC GCAGCCGACG GGTCGAGGCG
GGAGCGAAAA TCAGCATCTT TCATATCGAT CTCGACCGCT TCAAGCAGAT CAACGACACG
ATGGGGCATG CGGCCGGCGA CGAGATCTTG AAGCACGCGG CAAGCCTCCT CAGGGACAAT
GCACGCCAGG ACGACTTCGT TGCCCGGATC GGCGGCGACG AGTTCGTCAT CATTCGCGCG
AGCGACGGCG CCGACGAAGA CGCGGCGATG GCATCGCGGG TGATCGAGGC AATGAGCGTT
CCGGTCCGCT ACGAAGATCA GGAGTGCCGC ATCGGCGTGA GCATCGGCAT TGCCGCGCAA
ACAGATGCGA CGGATGACCT TTCCCAGGTT CTGGTCAATG CCGACATCGC TCTCTACGAA
GCCAAGCGCC GCGGCCGCAA TCGGCAGGAG ACCTTTACCG GCGCGTTGAA AACCGCCGTG
CTGCAGACGA AACAGACGGC CGACGAGATC CTGCGTGGCC TCGAGCAGAA CGAATTCGTC
GCCCATTTCC AGCCGCAATT CTGTCCGAGC TCGCTCGACA TCATCGGCGT CGAGGCGCTT
GCGCGGTGGG ATCATCCCAC CAAGGGTCTC CTCGGCCCGC ACGCCTTTCT CAAGACGGCG
GAGGACATCA ACGTCGTCGC GGCGATCGAC CAGAAGATCC TCGAACAGGC CCTTTTTCAG
ATCTATCGCT GGGAAGCAAA CGGCATCTAT GTCCCGAAGG TATCGGTCAA CCTTTCCTAT
CCGCGCCTCA GAGACGAGGG GCTGATCGCG CAGCTGGAGA AACTCTCCAT ACCCGAAGGG
CGGCTTTCCT TCGAGCTGCT CGAATCGATT TCGTTCGACG AAAACGACAT GATGGTGATG
TCCAACATCC GGCGCATCAA GGAACTCGGC ATCGATATCG AGATCGACGA CTTCGGCACC
GGCTATGCCT CGATCCTCAG CCTGCTGAAG CTGACGCCGC GCCGTCTGAA GATAGATCGG
CAACTGGTAC TGCCAATTCT CGCATCCCCG GCGGAGCGCC GGCTCGTGGC ATCGATCATC
GACATCGGCA AATCACTTGG GATCGACGTG ATCGCCGAAG GCGTCGAAAC GCTCGAGCAC
GCCCGCATTC TCAAGGAAAT GGAATGCCAT GGCCTGCAGG GCTACGCCTT CGCCCGGCCG
ATGAACGCCA ACGATTTTGC GACTTTCGTC TTCGAGCGGC GGTGGCACGC CGCCTGA
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| Protein sequence | MSRLSRHLAP SYLPAIIAAV VVAVAGVLAD NQNRIVSEAR QRSEVADALN PIRSRLESSV
NGNIQLVRGL IATIETEPDM QQQRFGELAR GVFSEGSLLR NIAAAPELVV AMVYPLKGNE
KAIGLDYRAN DKQRSSVMRA VASGEMVLAG PVDLVQGGRG LIGRFPVMTA SDDGNRFWGV
VSAVIDVDRL YRDSGLSSPT LDIDVAIVGR DGRGRDGAHF FGDPAIFDNS PVEMSVSLPG
GSWRMAAIPK GGWPATPRNA WQVRILIALG GMMIVAPMIV AGRLMAERQA NFRALRQSKD
QLQELSHRLR IALDTSMIGV WELDADSGKL LWDSRMRELY GVGSSMHEVY EDWRNTLHPE
DLARAEAEFD AALATGEAYN TEFRIRLPAG GVRHIRAIGS TYIGTNGSRK IVGVNWDVTA
DVETRATLSE AKRLAEAHSA ELEAARHRME FNALHDPLTG LPNRRFLDQI LLDRSRRVEA
GAKISIFHID LDRFKQINDT MGHAAGDEIL KHAASLLRDN ARQDDFVARI GGDEFVIIRA
SDGADEDAAM ASRVIEAMSV PVRYEDQECR IGVSIGIAAQ TDATDDLSQV LVNADIALYE
AKRRGRNRQE TFTGALKTAV LQTKQTADEI LRGLEQNEFV AHFQPQFCPS SLDIIGVEAL
ARWDHPTKGL LGPHAFLKTA EDINVVAAID QKILEQALFQ IYRWEANGIY VPKVSVNLSY
PRLRDEGLIA QLEKLSIPEG RLSFELLESI SFDENDMMVM SNIRRIKELG IDIEIDDFGT
GYASILSLLK LTPRRLKIDR QLVLPILASP AERRLVASII DIGKSLGIDV IAEGVETLEH
ARILKEMECH GLQGYAFARP MNANDFATFV FERRWHAA
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