| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2804 |
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| Symbol | |
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| ID | 5323674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 2926730 |
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| End bp | 2928343 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640791749 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001328469 |
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| Protein GI | 150398002 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.414276 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.103238 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCCT TCGCCGAATT GCTCGACCGG CTGGTGCTGA CGCCGCAGCG AAACGCCAAG
ATCCGGCTGC TCGTCGATTA CTTCCACAGC GCGCCCGATC CGAGCCGCGG CTACGCGTTG
GCCGCGATCG CCGGAACGCT CTCGCTGAAC ACGGTGAAGC CTGCTCTCAT TCGCGACCTG
CTGCTCGAGC GTATGGACGG CGTACTGTTC CAGTACTCCT ACGATTATGT AGGCGATCTC
GCGGAAACAG TCTCTCTGGC CTGGGAGCCG CCGGCGGAGG TCGCCCCCGA GGACATTCCG
CTCGGGGAAG TCGTCGAACG GCTTCAAAAA GCGGGCCGTT CCGAGGTCCG TTCGCTCGTC
CGCGAGATGC TGGACCGGCT CGATACCTCC GGCCGCTTCG CCCTCCTGAA GCTCGCGACG
GGAGGCCTGC GTATCGGGGT CTCGGCACGG CTTGCGAAAC AGGCGCTTGC GGAGATGGGC
AGCAGGGAGG TGACAGAGAT CGAAACGCTC TGGCACGGCC TGGAGCCGCC CTACCGGCCG
CTTTTCCTCT GGCTCACCGG CGAGGGCGAA ATGCCGTTGC TCAAGACGCC GGCGATATTT
CACTCGGTGA TGCTCGCGAC AGCGGTGGGC GAAGGCGAGC TCGATGGTCT CGATCCGAGC
GACTACGCGG CCGAGTGGAA ATGGGACGGT ATCCGCGTCC AACTCGCCAA TGTCGGCGGG
GTCCGCCGTC TCTACTCTCG CAGCGGTGAC GAGATTTCCT CCGCCTTTCC CGAAATCATC
GAGGTTGCCG GGATTGACGG CGTCATCGAC GGCGAGCTTC TGGTCGGCGG AACGATGCGC
AGCAACCGCG CCACCGGTAC GTTCGCCGAC CTGCAGCAGA GGCTGAACCG GAAGACCGTC
AGTCGCAAGC TCCTCGATGA TTATCCGGCA TTCATTCGCG CCTATGACGT GCTCTTTTCA
GGCGAGCGCG ATATCAGGCC CGAGCCCTTC CATGTCCGCC GCGGGGCCCT GTCGGCGCTG
ATCGAAGCAG CCTCGCCGCA GCATTTCGAT CTCTCGCCAC TCGTCCCGTT TTCGAACTGG
AAGGAGCTCG ACGAGCTACG AGCGAAGCCG CCCGACCCCG TGATCGAGGG CGTCATGCTG
AAACGTCTGG ACTCGCCCTA TCTGGCCGGA AGATCCAAGG GCCCCTGGTT CAAGTGGAAG
CGTGCGCCCT TCAATATAGA TGCCGTGCTG ATGTATGCGC AACGCGGCCA CGGCAAACGT
TCAAGCTATT ATTCCGACTT CACCTTCGGA GTTTGGACGG AGGGGGAAGA CGGAACGAGC
CTCGTTCCGG TCGGCAAGGC CTATTTCGGT TTCACCGATG CCGAGCTCGA GATTCTCGAC
CGTTTCGTGC GCGACAATAC GGTCGAACGT TTCGGTCCCG TGCGCGCGGT GCGCGCCGAA
CCCGACAAGG GTTTCGTCGT CGAGGTCGCC TTCGAAGGCC TCAACCGCTC CACCCGTCAC
AAGTCCGGCG TAGCCATGCG CTTTCCGCGG ATTGCCCGGC TCAGACCCGA CAAGCTGCCA
CGCGACGCGG ACCGACTGGA AACGTTGCAG GCGATGATCG GGCCGCCAAC TTGA
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| Protein sequence | MKAFAELLDR LVLTPQRNAK IRLLVDYFHS APDPSRGYAL AAIAGTLSLN TVKPALIRDL
LLERMDGVLF QYSYDYVGDL AETVSLAWEP PAEVAPEDIP LGEVVERLQK AGRSEVRSLV
REMLDRLDTS GRFALLKLAT GGLRIGVSAR LAKQALAEMG SREVTEIETL WHGLEPPYRP
LFLWLTGEGE MPLLKTPAIF HSVMLATAVG EGELDGLDPS DYAAEWKWDG IRVQLANVGG
VRRLYSRSGD EISSAFPEII EVAGIDGVID GELLVGGTMR SNRATGTFAD LQQRLNRKTV
SRKLLDDYPA FIRAYDVLFS GERDIRPEPF HVRRGALSAL IEAASPQHFD LSPLVPFSNW
KELDELRAKP PDPVIEGVML KRLDSPYLAG RSKGPWFKWK RAPFNIDAVL MYAQRGHGKR
SSYYSDFTFG VWTEGEDGTS LVPVGKAYFG FTDAELEILD RFVRDNTVER FGPVRAVRAE
PDKGFVVEVA FEGLNRSTRH KSGVAMRFPR IARLRPDKLP RDADRLETLQ AMIGPPT
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