Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2740 |
Symbol | |
ID | 5323610 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 2854543 |
End bp | 2856753 |
Gene Length | 2211 bp |
Protein Length | 736 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640791685 |
Product | glycogen branching enzyme |
Protein accession | YP_001328405 |
Protein GI | 150397938 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.296268 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGTTC CCCCCGGCCA GGATCCAGCT CCCGCCCCGT CAGGCACGCT GCCAGCGCCG GAAATTGCGG CAATACTTTC CGGCACCCAT AGCGACCCCT TTGCCGTCCT TGGAGTCCAC GCCGCGGGCA AGACATTTGT TGCCCGATGC TTCATTCCCG GAGCGGAGAC GGTCGTTGCG GAGACGCTTG CCGGGAACGA ACTCGGCACG CTCGTGCGGC GCGACGAGGC CGGCTTCTTC GAGGGGCCGG TGGCCTTGAG CAAGGAGCAA CCCGTCCGCT ACCGCGCTCG CAATGGCGGC GGCGAATGGA CGGTCATCGA TCCCTACAGC TTCGGTCCCG TGCTCGGGCC GATGGACGAT TACTATATCC GCGAGGGCTC GCATCTTCGC CTCTTCGACA AGATGGGTGC GCATCCGATC TCGCATGAAG GCGCGGAGGG CTTTCACTTC GCCGTCTGGG CGCCGAACGC GCGGCGCGTC TCCGTCGTCG GGAACTTCAA TGAATGGGAC GGGCGCCGGC ACGTGATGCG CCTGCGCGTG GACACCGGTA TTTGGGAAAT CTTCATACCC GGCGTGCCGG TCGGCACACC CTACAAGTAC GAAATTGTCG ACCGTCAAGG CACGCTCTTG CCGTTGAAAG CCGACCCTTT TGCCCGCCGG TCGGAACTCA GGCCCGACAC GGCTTCCATG ACGGCGGCCG AAATCGCTCA GGTTTGGGAA GATGAGGCGC ATCGGCGCCA CTGGGCCGAG CTCGATCCGC GCCGCCAGCC GATCTCGATC TACGAGGTCC ACGCCGCCTC ATGGCAGCGT CGCGACAATG GCGACATGCT CTCCTGGGAC GAGCTGGCGG AAAGGCTGAT CCCCTATTGC GTCGACATGG GCTTCACCCA TATCGAGTTC CTGCCCATTT CGGAATATCC CTATGACCCG TCCTGGGGCT ACCAGACCAC CGGCCTGTAT GCGCCGACCG CACGCTTCGG CGAGCCGGAG GGCTTTGCGC GCTTCGTCAA CGGTTGCCAC AAGGTCGGCC TCGGCGTCAT CCTCGACTGG GTGCCGGCGC ATTTCCCGAC GGACGAACAC GGGCTGCGCT GGTTCGACGG CACCGCCCTC TACGAGCATG CGGATCCACG CCAGGGCTTT CACCCCGACT GGAACACTGC AATCTACAAT TTCGGCCGTC AGGAGGTCGT CGCCTTTCTG GTCAACAACG CCCTCTACTG GGCGGAGAAA TTCCATGTCG ACGGCCTGCG CGTCGATGCG GTCGCTTCGA TGCTTTATCT CGACTATTCG CGAAAGCATG GCGAATGGGT GCCGAACGAA TATGGCGGCA ACGAAAACCT CGAGGCCGTG CGTTTCCTGC AGACGATGAA TTCCAGCATA TACGGTATTC ACCAGGGCGT GCTGACCATC GCCGAGGAGT CGACCTCCTG GCCGAAGGTC TCGCACCCGG TGCATGCGGG CGGCCTCGGC TTCGGGTTCA AGTGGAACAT GGGCTTCATG CATGACACGC TGCAATATCT CGCGCGCGAG CCCGTTCATC GGAAGTTCCA CCATAACGAC CTGACTTTCG GGCTGCTCTA TGCCTTCAGC GAAAACTTCG TGCTGCCGCT CTCTCATGAC GAGGTCGTGC ACGGCAAGGG ATCGCTGATC GCCAAGATGG CCGGCGATGA CTGGCAGAAA TTCGCCAATC TCAGGGCCTA TTACGGTTTC ATGTGGGGCT ATCCCGGCAA GAAGCTGCTT TTCATGGGAC AGGAATTCGC GCAGTGGCGA GAGTGGTCTG AGGACCGCGC ACTCGACTGG AACCTGCTCG AATACAATCT GCACGAAGGA ATGCGCCGCC TGGTGCGCGA CCTGAACGGT ACCTACCGCT CGAAGCCGGC GCTGCACGCG CGCGACTGCG AGGGCGACGG ATTCGAGTGG CTGATTGCCG ATGACCGTCA AAATTCCGTC TTCGCCTGGC TCAGGAAAGC ACCCGGTGAG AAGCTCGTCG CCGTCATCAC CAATTTCACT CCCGTCTACC GCGAACATTA CGACATACCG CTTCCGGTCG CCGGGCGCTG GAAGGAAATC CTCAACACCG ACGCGGAAAT CTACGGAGGA AGCGGCAAGG GTAACGGCGG CGCCGTCATT GCGGAAAAGA GAGCGAACGG AGAGACAATC GCCACCATCA CGCTGCCGCC TCTGGCGGCA CTGATGCTGG AGCAGGATTA G
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Protein sequence | MTVPPGQDPA PAPSGTLPAP EIAAILSGTH SDPFAVLGVH AAGKTFVARC FIPGAETVVA ETLAGNELGT LVRRDEAGFF EGPVALSKEQ PVRYRARNGG GEWTVIDPYS FGPVLGPMDD YYIREGSHLR LFDKMGAHPI SHEGAEGFHF AVWAPNARRV SVVGNFNEWD GRRHVMRLRV DTGIWEIFIP GVPVGTPYKY EIVDRQGTLL PLKADPFARR SELRPDTASM TAAEIAQVWE DEAHRRHWAE LDPRRQPISI YEVHAASWQR RDNGDMLSWD ELAERLIPYC VDMGFTHIEF LPISEYPYDP SWGYQTTGLY APTARFGEPE GFARFVNGCH KVGLGVILDW VPAHFPTDEH GLRWFDGTAL YEHADPRQGF HPDWNTAIYN FGRQEVVAFL VNNALYWAEK FHVDGLRVDA VASMLYLDYS RKHGEWVPNE YGGNENLEAV RFLQTMNSSI YGIHQGVLTI AEESTSWPKV SHPVHAGGLG FGFKWNMGFM HDTLQYLARE PVHRKFHHND LTFGLLYAFS ENFVLPLSHD EVVHGKGSLI AKMAGDDWQK FANLRAYYGF MWGYPGKKLL FMGQEFAQWR EWSEDRALDW NLLEYNLHEG MRRLVRDLNG TYRSKPALHA RDCEGDGFEW LIADDRQNSV FAWLRKAPGE KLVAVITNFT PVYREHYDIP LPVAGRWKEI LNTDAEIYGG SGKGNGGAVI AEKRANGETI ATITLPPLAA LMLEQD
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