| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2613 |
|---|
| Symbol | |
|---|
| ID | 5323482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 2708116 |
|---|
| End bp | 2709147 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640791557 |
|---|
| Product | RluA family pseudouridine synthase |
|---|
| Protein accession | YP_001328278 |
|---|
| Protein GI | 150397811 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGATC CCTTTAAACA AGCGCCCGGC AATAGGAAAG TCCTGACAGC GGGCGATGAC
GCGTCGGGGC GCCTCGACGC CTTCCTGACG GAAGCGCTTG GGGGCGAGTT TTCCCGCAAC
CGTATCAAGG GGCTGATCGA GCAAGGGGCC GTCTCGGTCA ACGCTCTAAC CGTCACCGAG
TCGAAGCGAA AGGTCCATCC GGGCGACACC TTCCAGATTG CCCTGCCGGA GCCGGAGGAC
CCCGAGCCCA AGGGGGAGGC GATAACGCTC GACGTGCTTT ACGAAGATCA AGACTTGATC
GTACTGGTGA AGCCGGCCGG ACTGGTCGTG CATCCGGGCG CCGGCAACTG GACCGGTACC
CTGGTCAACG CGCTCATCCA CCATTGTGGC GACAGCCTTT CCGGCATCGG TGGTGTCAAG
CGCCCGGGTA TCGTTCATCG CCTCGACAAG GACACGAGTG GCGTCATGGT TGTCGCGAAG
AATGATGCCG CTCACCGTCA TCTTTCCGAT CAATTCGCCG ACCACGGCCG CAACGGTCCG
CTGGAACGCG CCTATCGCGC CGTTGTCTGG GGCCGGCCCC GCCAGCTGAA GGGCACGATC
GACGCGCCGC TTGGGCGGGC CGGCGACCGC ACGAAGCGGG CCGTCAAACG CGACGACAGC
GACGATGCGC GCGAGGCGAT CACCCATTAC GAAGTGGTCG ACCGCTATCA CGAGAAACCG
GACGGCACCT CCCTCGCCTC TGCGGTCGAG TGCCATCTCG AGACCGGCCG CACCCATCAA
ATTCGCGTGC ACATGGCGCA TATCGGCCAT CCGCTGATCG GGGATCCGGA CTACGGCGCC
GCCTTCCGCA CCAAGGCCAA CCTGCTGCCG GAACCGGCAA GGACGGCCGT CAATCGCTTC
CCCCGGCAGG CCCTGCACGC CTTCATGCTT CAGTTCGAAC ACCCGTCAAC CGGCGAGACC
ATGCATTTCG AAGCGGCCGT GCCGAGTGAT ATGCAGGAAT TGGTCGACGC GTTGAGGATG
GCCGCCCCTT GA
|
|---|
| Protein sequence | MNDPFKQAPG NRKVLTAGDD ASGRLDAFLT EALGGEFSRN RIKGLIEQGA VSVNALTVTE
SKRKVHPGDT FQIALPEPED PEPKGEAITL DVLYEDQDLI VLVKPAGLVV HPGAGNWTGT
LVNALIHHCG DSLSGIGGVK RPGIVHRLDK DTSGVMVVAK NDAAHRHLSD QFADHGRNGP
LERAYRAVVW GRPRQLKGTI DAPLGRAGDR TKRAVKRDDS DDAREAITHY EVVDRYHEKP
DGTSLASAVE CHLETGRTHQ IRVHMAHIGH PLIGDPDYGA AFRTKANLLP EPARTAVNRF
PRQALHAFML QFEHPSTGET MHFEAAVPSD MQELVDALRM AAP
|
|---|
| |