Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2456 |
Symbol | |
ID | 5323317 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2538036 |
End bp | 2539391 |
Gene Length | 1356 bp |
Protein Length | 451 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640791394 |
Product | extracellular solute-binding protein |
Protein accession | YP_001328123 |
Protein GI | 150397656 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.674954 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCAA TGCTGAAAAA GGGCTTGCTC GCCGCGGCGC TGATGGCCTC GACCGCGCCT GCGGCCATGG CGCAGGAATG CGCGGATGCG GATCGCGTGC CGATCACCTG GTCGACGATT GCCGGCTTCT ACACCGATGC GATGGCAGAG CTGGTATCGG GCTTCGAGGC AGGCCATTGC GTGAAGGTCA ATGTCGTCAA CATAGACAAC TCACAGCTCT ACAACAAGCA GGTCATCGAG ATGGTCGGCC AGACCGGTGC CTATGATGTC GTGACCCTCG AAACCTCGGA GAAGGCGGAA TTCGCAGAGA ACGGTTTCAT CCTGCCGATG ACCGAATATT TCGCGGACAA GAAGGCGCAG CTCGACGACG TCGCGCCGAC GCTCGCTGCT CTGACGACGC AGTACAAGGA TGATGTCTGG GGTCTGCCTT ATTACACCTA TACGGCCGGA TATATCTATC GTGCCGACCT GTTCGACGAT CCCACGGAAA AGGAGGCCTT CAAGAAGCGC TTCAACTACG ACCTGGCCGT GCCGACCACC TGGGCGCAGC ACCGCGATAT CGCCGAGTTC TTCACGCGTA AGGCCGGTGA GACGCTGAAG GGCGAAAAGC TCACCAAGGA CTTTTACGGC GTCGGCCTGA TGGCCGGTCC TTTCCCGGAA ATCCAGGACG AGATGTCCGG CGTGCTCTGG TCGCAAGGCG CGGACTGGCT CACCGACGAG GGCAAGGTGC CGGTCGATGC CGTCGAAAAG GCGATGAACG ACTATCTGGA ACTGGTCAAG TATGCGCCGC CCGCCGCGCT CACCGTTACC TATGACGGCG TCATGAACCA GATGAAGGAC GGGCAGATCG CCCAGACCTA TTCCTTCTTC CTCGACCAAT GGCCGAATGC AGTGCAGACC GAAACCAGCG TGGCCGGCGC CAAGATGGGC GTCGCCGAGG CGCCGGAGAA GAAGGCCTAT ATCGGCGGCT TCCTGCTGGC GGTTTCCGCA TCCTCCGCCC ACCCGAAGGA GGCGATGGAC TTCGTCGCCC ACATCGGCGG ACATGATGCG CAGATGGAGT TCGCCAAGGC CGGCGGTACC TCGACGCTGA TGAGCGTTCT TTCCGATCCG GCCTTTGCCG CGCCGGAAAG CCGCGGGAAG ACCGGCCACT TTTCAACGCT CCTGGAGATC TTCGACTCGA TGAAGGGTTT CCGCTCGAAC CTGTTCGATA CGCCGTTCGG CGCGAAGATC TACAACACGA TGCAGATCCC GCTGCAATCG GCCGCTGCCG GTCAGATTTC GGCGCGCCAG GCCGCCGAAC GGCTTGCCGT CGAAGTCGAG AAGATTTGCG GCGGCCCGTG CCCGATCGGC AAGTGA
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Protein sequence | MKSMLKKGLL AAALMASTAP AAMAQECADA DRVPITWSTI AGFYTDAMAE LVSGFEAGHC VKVNVVNIDN SQLYNKQVIE MVGQTGAYDV VTLETSEKAE FAENGFILPM TEYFADKKAQ LDDVAPTLAA LTTQYKDDVW GLPYYTYTAG YIYRADLFDD PTEKEAFKKR FNYDLAVPTT WAQHRDIAEF FTRKAGETLK GEKLTKDFYG VGLMAGPFPE IQDEMSGVLW SQGADWLTDE GKVPVDAVEK AMNDYLELVK YAPPAALTVT YDGVMNQMKD GQIAQTYSFF LDQWPNAVQT ETSVAGAKMG VAEAPEKKAY IGGFLLAVSA SSAHPKEAMD FVAHIGGHDA QMEFAKAGGT STLMSVLSDP AFAAPESRGK TGHFSTLLEI FDSMKGFRSN LFDTPFGAKI YNTMQIPLQS AAAGQISARQ AAERLAVEVE KICGGPCPIG K
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