| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2397 |
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| Symbol | |
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| ID | 5323258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 2472809 |
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| End bp | 2473711 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640791335 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_001328064 |
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| Protein GI | 150397597 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | [TIGR01593] toxin secretion/phage lysis holin |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.00620383 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGGAGTATT TTATCCAGCA GCTCGTCAAT GGGCTGACGC TTGGGTCTAT TTATGGTATG
ATCGCGATCG GTTATACCAT GGTCTACGGC ATCATCGGCA TGATCAACTT CGCCCATGGC
GATATTTTCA TGCTTGGCGG CTTTGCCGCT TTGATTGTAT TCTTGATTCT CACGACATTC
ATTGGCGGTG TGCCGGTTGT ACTGGCGCTT TTGATCATGA TGATCGTCGG TATGTTGACG
GCTGCGCTTT GGAACTGGAC CATCGAGCGC GTGGCCTATC GTCCGTTGCG CGGTTCGTTC
CGTCTGGCGC CGCTGATCAC GGCGATCGGC ATGTCGATCG TCCTGTCGAA CTTCATTCAG
GTGACGCAAG GCCCGCGAAA CAAGCCGATC CCGCCGCTGG TATCCTCGGT TTATGAGATC
TTCGGCATCA CCGTCTCGCT GAAGCAGATC GTTATCGTCG TCATCACCGC GATCCTGCTC
TCGGTCTTCT GGTATATCGT CAATCGAACG CCGCTCGGAC GTGCCCAGCG CGCTACCGAG
CAGGATCGTA AGATGGCTGC CTTGCTCGGT GTCGATGTCG ACCGCACGAT CTCTGTGACC
TTCATCATGG GGGCCGCGCT CGCCGCCGTC GCGGGTACGA TGTATCTGAT GTATTACGGC
GTGGTCGTGT TCACCGACGG GTTCGCTCCG GGGGTCAAGG CCTTTACCGC TGCAGTCCTC
GGTGGCATCG GCTCGCTGCC CGGTGCCGTG CTCGGCGGGT TGCTGATCGG CCTTATCGAG
TCGCTTTGGT CCGCCTATTT CACCATCGAC TACAAGGACG TCGCAACCTT TTCCATTCTC
GCGATCGTCC TGATCTTCAA GCCGTCGGGT ATTCTCGGAC GACCGGAAGT CGAGAAGGTA
TAG
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| Protein sequence | MEYFIQQLVN GLTLGSIYGM IAIGYTMVYG IIGMINFAHG DIFMLGGFAA LIVFLILTTF
IGGVPVVLAL LIMMIVGMLT AALWNWTIER VAYRPLRGSF RLAPLITAIG MSIVLSNFIQ
VTQGPRNKPI PPLVSSVYEI FGITVSLKQI VIVVITAILL SVFWYIVNRT PLGRAQRATE
QDRKMAALLG VDVDRTISVT FIMGAALAAV AGTMYLMYYG VVVFTDGFAP GVKAFTAAVL
GGIGSLPGAV LGGLLIGLIE SLWSAYFTID YKDVATFSIL AIVLIFKPSG ILGRPEVEKV
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