Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2320 |
Symbol | |
ID | 5323181 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2400629 |
End bp | 2402272 |
Gene Length | 1644 bp |
Protein Length | 547 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640791258 |
Product | alpha amylase catalytic region |
Protein accession | YP_001327987 |
Protein GI | 150397520 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.80263 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGCCC CATCGGAATC GGATGACAAC TGGTGGCGCG GAGCGGTCAT CTATCAGGTC TATCCGCGAT CTTTCCAGGA CACCGACGGC GACGGAATGG GTGACCTTCG CGGCGTTACC CGGCGGCTTC CGCATATCGC CTCGCTCGGT GTCGATGCCA TCTGGCTCTC GCCTTTCTTC ACCTCGCCCC AAGCGGACAT GGGCTATGAC GTTTCGGATT ATTGCGACGT CGATCCGATG TTCGGCACGC TCGACGATTT CGACGAGATG ATGGCGGAAG CCCATCGGCT GGGACTCAAG GTGATTATCG ACCAGGTGAT CTCGCACACA TCCGACCGGC ATCCCTGGTT CATGGAGAGC CGTTCGAGCA GGACGAATGC CAAGGCGGAC TGGTATGTAT GGGCCGACCC GAAACCGGAC GGCACGGCGC CGAACAACTG GCTTTCAATC TTCGGCGGCC CGGGCTGGGA GTGGGATGGG GTCCGCAGGC AATATTACCT GCACAATTTC CTTTCGTCGC AGCCCGATCT CAATTTCCAT AACCCTGAAG TTCAGGAAGC TGTGCTGGCG ACGGTCCGCT TCTGGCTGGA CCGAGGCGTG GACGGTTTCA GGCTCGATAC GGCGAACTTC TATTTCCACG ATCGGCTTTT GCGGGACAAC CCGCCGCTGG TGCCGGATCC GGACGCGACG AGCCGCGACG CGCCAGAGGT CAATCCTTAC GGCATGCAGA ACCACCTCTA TGACAAGACG CAGCCGGAAA ACATCGATTT CCTGCGCCGG TTCCGGGCGC TGCTCGATGA ATATGGCGGC CGCGCGACGG TGGGCGAAAT CGGCGACGGA TCACGCTCGC TGCAGACGGT TGCCGCCTAT ACGAGTGGCG GCGACAAGCT GCACATGTGC TACACATTCG ACCTGCTCGG ACCGGAATTC ACCGCGCGTC ACATCCGCCG CTGCGTTGAG AGTTTCCAGG CAACGGTGGC CGACGGCTGG GTCTGCTGGG CCTTTTCCAA TCACGACGTC ATGCGCCATG TCAGCCGCTT TGCGTTGCGC GAGGCCGACC GTGCGCGCGT GGCGAAGCTC GCGATTTCGT TGCTGGCCAC TCTGCGGGGC ACCATCTGCC TTTACCAGGG GGAGGAATTG GGATTGCCGG AAGCCGACCT TGCCTTCGAA GAACTGCGCG ATCCATACGG AATCCGCTTC TGGCCCGCCT TTGCCGGACG CGACGGATGC CGGACGCCGA TGGTATGGGG AAGTGAACTG AAGAATGCCG GCTTTTCCGA CGGCGTTCCC TGGCTGCCGG TGCGCGAAGG GCACCGGACG CTGGCGGTGG ACGCGCAGGA TGGTGTCGAG GGTTCCGTGC TCGAGCACTA TCGAGACACC CTTGAATTCC GCCGGAGGCG GCCGGCGCTC GTCGATGGAG ACATGGCGTT CCTCGGCACC AACCAGGATA TTCTGGTCTT CACGCGGGAG AAAGACGGCG ATCGGCTGCT GTTCGTCTTC AACCTGACGC CGGAACCGCA GACGTTTCAG CTTCCGGCAA CGCTCGTGGC CGAGCCGCTG CCGATGCCCG GATTCGCGCC GCCTTTCGCG GACAATGCGA TCACGCTTGC TGCGCTCGAC GTTTTCTGCG GCAGGCTGCG TTAG
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Protein sequence | MAAPSESDDN WWRGAVIYQV YPRSFQDTDG DGMGDLRGVT RRLPHIASLG VDAIWLSPFF TSPQADMGYD VSDYCDVDPM FGTLDDFDEM MAEAHRLGLK VIIDQVISHT SDRHPWFMES RSSRTNAKAD WYVWADPKPD GTAPNNWLSI FGGPGWEWDG VRRQYYLHNF LSSQPDLNFH NPEVQEAVLA TVRFWLDRGV DGFRLDTANF YFHDRLLRDN PPLVPDPDAT SRDAPEVNPY GMQNHLYDKT QPENIDFLRR FRALLDEYGG RATVGEIGDG SRSLQTVAAY TSGGDKLHMC YTFDLLGPEF TARHIRRCVE SFQATVADGW VCWAFSNHDV MRHVSRFALR EADRARVAKL AISLLATLRG TICLYQGEEL GLPEADLAFE ELRDPYGIRF WPAFAGRDGC RTPMVWGSEL KNAGFSDGVP WLPVREGHRT LAVDAQDGVE GSVLEHYRDT LEFRRRRPAL VDGDMAFLGT NQDILVFTRE KDGDRLLFVF NLTPEPQTFQ LPATLVAEPL PMPGFAPPFA DNAITLAALD VFCGRLR
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