Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2226 |
Symbol | |
ID | 5323087 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2304702 |
End bp | 2306645 |
Gene Length | 1944 bp |
Protein Length | 647 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640791164 |
Product | ATP-dependent DNA helicase RecQ |
Protein accession | YP_001327893 |
Protein GI | 150397426 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0514] Superfamily II DNA helicase |
TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family [TIGR01389] ATP-dependent DNA helicase RecQ |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGCGGCGAG TCAGCAGGCT AGCGGAATGC TGCCTGTGGT TTACACGCGA GCACCCGCGA CGCCATATTG TACGCACCGA CGAAAGCGAT TCCATGCCCG AAAGCCACAG CACCGCCTGC CTGTTCGAAA CGGAAGGCGT CCGCAATCCG CTCGATCTCT TGAAACGCAT TTACGGCTAT TCCACCTTCC GCGGTCAGCA GCAGGAGGTC ATCGAGCATG TGGTTGCCGG CGGCGATGCC GTCGTGCTTT TTCCGACCGG GGCGGGCAAA TCGCTCTGCT TCCAGATTCC GGCGCTCTGC CGTGGCGGCG TCGGCGTCGT CGTTTCGCCG CTGATCGCTT TGATGCGCGA TCAGGTGGAG GCGCTCAAGC AGCTCGGCGT CCGGGCGGCC GCCCTCAATT CCTCCCTGAC GCGGGAGGAG GCGATTGCCG TTCGCCGTTC GCTTTCGACC GGCACTCTGG ACCTCATCTA TGTGACGCCG GAACGCGCCG TCACCGATGG TTTCGCCGAA ATGATCGCCG GTGCCGAAAT TGCTCTTTTC GCGATCGACG AGGCCCATTG CGTTTCGCAA TGGGGACATG ACTTTCGCCC GGAATATCGC GGCCTCGGCT GCCTCGCCGA ACGCTTCCCG AACGTACCGC GCATCGCGCT CACGGCCACC GCGGATCCGC ACACACGCGC CGACCTGATC GAGCGCCTGG CACTTGGCGC GGCGCGGGTT TTCACCTCCA GTTTCGACCG CCCGAACATC GCCTATGAGA TCGTGGAGCG CGATCAGCCG CGCCAGCAAT TGCTGCGCTT CCTGTCGCGC TTCAAGGATG CAAGCGGCAT CGTTTATTGC CTCTCTCGCG CGAAGGTCGA GGACACGGCG GAATGGCTGA ATACGCAGGG GATTCGTGCG CTCCCCTATC ACGCCGGCAT GGACAGGGCG TTGCGTGACG CGCATCAGGA CGCTTTCCTC AAGGAGGAGA ATTTGTGCCT CGTCGCAACC GTCGCCTTCG GTATGGGAAT CGACAAACCG GATGTGCGCT ACGTTGCCCA TCTGGATCTG CCAGGTTCGG TGGAGGCTTA TTACCAGGAG ACGGGGAGGG CCGGGCGCGA CGGGCTGCCT TCGGAAGTGT GGATGGCCTA TGGCATGGCC GACGTCATCC AGCGCCGGCG AATGATCGAC GAGGGCGGTG CGCCCGAGGA GGTCAAGAGA ATTGAGCGGG CGAAACTCAA TTCGCTGCTT GCAATTTGCG AGACGGCAGG CTGCCGGCGC CAGGCGGTCC TCGCGCATTT CGGCGAAGCG CATCCGGGCG GGTGCGGCCA TTGCGACACC TGCCTGAAAC CGGTCGAGAC CTGGGACGGT ACGGAAGCGG CGATCAAGGC GCTCGCGGCC GTTTACAGGA CCGGCGAGCG TTTCGGAACC GGCCATCTGA TCGATGTACT TATGGGCAGC GTGAACGAAA AGACCGAGCG CTTCGGGCAT GTCGACATGC CGGTGTTCGG GGCCGGCAAG GACCTGCCGG CGCGCACCTG GCAATCCATC TTCCGCCAAC TGCTCGCCGC GGGGCTCATC TCCGTGGATC ACGGCGCCTT CGGGGCATTG AAACTCGAGC CTGAGGCACG CAGCGTCTTC CGCCGCGAGC GGCAGGTGCT CTTCCGCAAG GACCGCCCGA GTTCCGGTAA GGCGGCGCGC GGCCAGAAGG CGACGCGAGA GCGGTCCGAC CTCGCGGGCT CCGATCTCGA GTTGTTTGAG CGGCTTCGCT CCGAGCGTCT TACTATCGCC CGCGAGATGG ACGTGCCGCC CTATGTCGTC TTCCCGGACG CTACCTTGAT TGCGCTTGCC AAGCGCCGAC CGCGCGATTT CGACGATCTC CTGGGCGTCC CCGGTATCGG AGAGACCAAG CGGGAGAGGT ACGGACAGGC TTTCCTCGCG GTGATCGAGG CTTTCGAGGG CTGA
|
Protein sequence | MRRVSRLAEC CLWFTREHPR RHIVRTDESD SMPESHSTAC LFETEGVRNP LDLLKRIYGY STFRGQQQEV IEHVVAGGDA VVLFPTGAGK SLCFQIPALC RGGVGVVVSP LIALMRDQVE ALKQLGVRAA ALNSSLTREE AIAVRRSLST GTLDLIYVTP ERAVTDGFAE MIAGAEIALF AIDEAHCVSQ WGHDFRPEYR GLGCLAERFP NVPRIALTAT ADPHTRADLI ERLALGAARV FTSSFDRPNI AYEIVERDQP RQQLLRFLSR FKDASGIVYC LSRAKVEDTA EWLNTQGIRA LPYHAGMDRA LRDAHQDAFL KEENLCLVAT VAFGMGIDKP DVRYVAHLDL PGSVEAYYQE TGRAGRDGLP SEVWMAYGMA DVIQRRRMID EGGAPEEVKR IERAKLNSLL AICETAGCRR QAVLAHFGEA HPGGCGHCDT CLKPVETWDG TEAAIKALAA VYRTGERFGT GHLIDVLMGS VNEKTERFGH VDMPVFGAGK DLPARTWQSI FRQLLAAGLI SVDHGAFGAL KLEPEARSVF RRERQVLFRK DRPSSGKAAR GQKATRERSD LAGSDLELFE RLRSERLTIA REMDVPPYVV FPDATLIALA KRRPRDFDDL LGVPGIGETK RERYGQAFLA VIEAFEG
|
| |