Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2112 |
Symbol | |
ID | 5322972 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 2173945 |
End bp | 2174730 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640791050 |
Product | glycoside hydrolase family protein |
Protein accession | YP_001327780 |
Protein GI | 150397313 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.140639 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGCCGGT TGTTCGTGGC TTTGCTGCCC ATCGCAGCCA TCCTGTCCTC CTGCACGTCG ACCGACTACG ACCTCATCAA GACGGCTTCC ATACAGCCTC GCTTCCACGA CACGGATCCG CAGGATTTCG GCGGCAACAC GCCACACCAT CACAACGTTC ACGGAATTGA CGTCTCCAAG TGGAATGGCG ACATCGACTG GCGCAAGGTC AAGAATTCCG GCGTGTCCTT CGCTTTCATC AAGGCCACGG AAGGCAAGGA CAGAGTGGAC GCCCGTTTCC ACGAATACTG GCCCCAGGCG CGCGCCGCCG GCATCGCCTA CGCGCCCTAC CATTTCTATT ATTTCTGCTC GACCGCCGAT GCGCAGGCCA ATTGGTTCAT CGCCAATGTG CCGAAGAGCG CCGTCTACCT GCCGCCCGTC CTGGACGTCG AGTGGAATGG CGAATCCAAG ACCTGCCGCA CCCGACCGGC GCCCGAGACG GTGCGCTCCG AAATGAAGCG CTTCATGGAT CGGCTCGAGG CACATTACGG CAAACGGCCA ATCATCTACA CGTCGGTCGA TTTTCATCGC GACAATCTGG TCGGCGCCTT CAATGACTAT CATTTCTGGG TGCGGTCCGT CGCCAAGCAC CCGAAGGATA TCTACGTCGA TCGCCGGTGG GCCTTCTGGC AATATACCAG CACAGGCGTG ATCCCCGGCA TCCAAGGCAG CACGGACATC AACGCCTTCG CAGGCTCCCA CAGAAATTGG AAGAAGTGGG TCGCGACTGT TTCGCAGGCG AGATAG
|
Protein sequence | MRRLFVALLP IAAILSSCTS TDYDLIKTAS IQPRFHDTDP QDFGGNTPHH HNVHGIDVSK WNGDIDWRKV KNSGVSFAFI KATEGKDRVD ARFHEYWPQA RAAGIAYAPY HFYYFCSTAD AQANWFIANV PKSAVYLPPV LDVEWNGESK TCRTRPAPET VRSEMKRFMD RLEAHYGKRP IIYTSVDFHR DNLVGAFNDY HFWVRSVAKH PKDIYVDRRW AFWQYTSTGV IPGIQGSTDI NAFAGSHRNW KKWVATVSQA R
|
| |