Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1796 |
Symbol | |
ID | 5322654 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1878987 |
End bp | 1880600 |
Gene Length | 1614 bp |
Protein Length | 537 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640790734 |
Product | hemolysin-type calcium-binding region |
Protein accession | YP_001327466 |
Protein GI | 150396999 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.47796 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00183267 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCACAG TAGTGGGCAC GGCCGGAGTC GATATACTGG TTGGAACAGA GGAGAAGGAC CGCATTTGGG GCCTTGCAGG CGCGGATGAT ATCGAGGCCG GTGGCGGCGA CGATCTCGTC GACGGTGGCG CCGGGGACGA TCGTCTGGCA AGTACGAGCG GATACGACCG CCTCGACGGC GGCGAGGGGG ATGATCAAAT AACCCTGATC GGTACCGGCG GCGCGGTTAC GGGCGGGGCC GGTACCGATA CGTTGGTGAT CGACCTTGCG AACGTCAGCA CTTCCGTCCG GTTCAGCGGC GAGCACGGTC ACGGCATCAT CGGCTACAAC ACGTCAGACT GGGAGCATAT ATTCTTCAAC CGCATCGAAA GGCTAGTGCT GACCACCGGC AGCGGCAATG ACCGAATATT CGGCGCCTCG ACTGATGATA TCATCTCGAC CGGTGGTGGT AACGACATTG TCGGGCCGTA TGGCACCGAC GGCGATGACG GCACAAGCAT GCAGGGCGAC GACACGATCA ACACTGGCAC CGGGGGCGAC ATCATCAATG ACACTGTTGG CTCGAACCGG ATTTTTGCCG GTGACCATGA CGACATCATC TTTACGACGC TTTCTTCCAC GGTGATCGAC GGCGGGACCG GCTGGGACAG ACTCACCCTG CTCGATGAAG AAAGAACCGG GGACGTGACC CTCGATTTTG CGCGGGGATT CGCCTCGACG GGTACTCTGA TCAACGGCAT CGAGGTCGCC AACATCAATC TCGGTAATGG CAGCGACACG CTGATCGCCG GCAATCTCCT TTCGCTCAGC GCTCATCTGG GCGAAGGTGA CAATTACGCA GCCGGCAGCA GCGGCAGGGA TTACATCGCT TCCGGGAGCG GAGACGATGC CCTCTATGGC GACAGTGGCG ACGACATCCT GATCAGCAAC GGCGGTAATG ACGTGCTCGT CGGGGGCGAT GGGAACGACG AGATTCATGA CTCGGGATCG CGCTTCGATG ACGGTGACAC GTATATTGAC GGCGGCTCCG GCGACGATCT CATCCAGATG GTTGCGCCCT CCGGCTTCAT CGATGGCGGC GCCGGCAGCG ATACATTGCG CGTCGTCGGC CCTCTGACGG GCACACATTT CGATGCCTCG ACGGGCATGC TGGGCACATC TCTTGTCTTT ACCAATATCG AGAGGTTCGA ACTTTCCGGC GACTCAGGGG ACGATACAAT CCGCACGCTT GGAGGCGACG ATCAGCTCGC CGGCAATGAG GGTAACGACC GGCTCGACGG AGGAGCCGGC AAGGATGTGC TCTGGGGCGG GGGCGGTGAC GATGTGATGA CGGGCGGCGC CGGTGCCGAT ACCTACCTCT GGTCTTCGGA CACGTTTTCG TTCTCGGGTG TCGACCGCAT TACCGATTTC GATTTCGACG GCGGGGATGT GCTGCGCTTT ATCGGCAATG CATCGGATTC GACACGAATC GAGAGCTTCG CCGATCTGGT TGCTGCTGCG ACCGAGACGG ACGACGGGCT CTATATCGCC TTCAACGGGT CCGACAATTT CGGACTGTTC CTGGACAACG TTGCGCTTCA AGACCTTTCC GCGGACGATA TCGTTTTTGT CTGA
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Protein sequence | MTTVVGTAGV DILVGTEEKD RIWGLAGADD IEAGGGDDLV DGGAGDDRLA STSGYDRLDG GEGDDQITLI GTGGAVTGGA GTDTLVIDLA NVSTSVRFSG EHGHGIIGYN TSDWEHIFFN RIERLVLTTG SGNDRIFGAS TDDIISTGGG NDIVGPYGTD GDDGTSMQGD DTINTGTGGD IINDTVGSNR IFAGDHDDII FTTLSSTVID GGTGWDRLTL LDEERTGDVT LDFARGFAST GTLINGIEVA NINLGNGSDT LIAGNLLSLS AHLGEGDNYA AGSSGRDYIA SGSGDDALYG DSGDDILISN GGNDVLVGGD GNDEIHDSGS RFDDGDTYID GGSGDDLIQM VAPSGFIDGG AGSDTLRVVG PLTGTHFDAS TGMLGTSLVF TNIERFELSG DSGDDTIRTL GGDDQLAGNE GNDRLDGGAG KDVLWGGGGD DVMTGGAGAD TYLWSSDTFS FSGVDRITDF DFDGGDVLRF IGNASDSTRI ESFADLVAAA TETDDGLYIA FNGSDNFGLF LDNVALQDLS ADDIVFV
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