Gene Smed_1641 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1641 
Symbol 
ID5322499 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1733657 
End bp1736314 
Gene Length2658 bp 
Protein Length885 aa 
Translation table11 
GC content63% 
IMG OID640790581 
Producthypothetical protein 
Protein accessionYP_001327313 
Protein GI150396846 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.118631 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAATTT TTACAGGTAT CGCCACGGCA ATCGCTGGCG CGCTGTTCGG CGGTTCTGCG 
CTTGCCACCA GCCTGATCGG CGGCGCGCTC GCCTTCGGCG CGAAGTTTGC TGTGGGCAAG
CTCACCCAGC AGAAACAGGG CAAGCAGAAG CACACGGCCG TCCAGGGCGA AATCCAGTTT
GGCGGCGACG TGCCGGTCGG AACCCTCTAT GGTGTCGGCA AGACCAAGGG GCAGCGTGCC
TTCTATGCCA AGTGGGACAA GGGCAACAAG CGCAATGCCG AGGTCTTCAT CCTCGCCAAC
GGCTGGTGCG ACGGGCTGGA GCCGTACGTC TACATGTATG GCGAGAAATA CAATCTCGTG
GCGCAGGCGA CGATCGGCAA CGAGGTCGCA CGCTATGGCG TCGAGCGCTT CATCGACGGC
GACGGCAACA GCGCGATCTC GATCCGCTTC TACGACGGCC GGCCGGGTCA GGGCGTCGAC
CAGCGCCTCG TCGACGTTAC GGCCAACCTC GGCAACAAGT GGAAGGCGAC CAGTAAGCTT
TCGGGCATGT GCTATGTCGT CGTCGAGCGC TACTATCACC TCGAATTCTT CCGTGACGCC
GGCAAGGGCA AGCCGGACAT CGATTTTGTG CTGCGCGGGC TTCGCGAATA CGACCCGCGT
AAGGACTCGA CGGTTGCCGG TGGCTCCGGG ACGCAGCGGC TCACCATGCC CTCGACCTGG
GTGCACACGA AAAACCCGGC CTTGCACCGG CTGAACTACC AGCTGGGCCT TCGCGCGCTG
GTCTCCGGCC GCACGCTGAT CGGCGAGGGC AAGAGCCTCG GCCAGATCGA CCTCGCCACC
TATTTCGTCG CTATGAACGT CTGCGACACG CTGCGGGCGA ACGGCAAGAA GACCTATGAG
TGCTCGCTCT TCGTCAGCGG CGACGACGAC CACACAGAGG TGCTGAAGCA GTTTGATGAC
GCGATGGCCG GCTATGGGCT TAACCGCCGC GGCCTGTCCG GCGTCATTCC CGGTGCACCG
CAGATCCCGG TCAAGGATCT GACTGCGGCC GACATCCCGA TTGACCGTGC CAAGGACGTG
CAGTTCCGGC CGTCGGCGTT CGAGCGCTTC AACCATCTCT CCGGCCAGTT CACCTCGATC
GAGTCGATGT GGAACCCGGA GAGCCTGAAG CCGGTCTATG TGAATGCGGA CATCGCCGCC
GACGGCCGGA ACCGGCAGAC GAGCATCGAT TTCCTGCAGG TGACCGATCC GGACATTGCG
CAGTACCTGC TCAATATCCG CTACCGGCAG AACCGCATGG GCGGCAAGGC GACGGTTCCG
GTCAGCCGTC GCTTTGGCCT CGCGGTGCAG GAAGGCGAGT GGATCACCTG GCGTGGCAAG
AGCTGGCTGA TCAGTGAATG GCGGGCGGAC GAGCGGCTGC GCATCACCCT GGTGCTTTCG
GAGACCAGTG CGGCGATCTA TGACGACGAC GGCATCGAGC CCGGCCCGAT CGTCGTGCCG
CCGACGCCGC CGATCAATCC GTCGCTGCTC TCGACCGTGC AGAACTTCAA TGTTGCCGCC
GGCATGATCA ACGGCGCGCA GGGCTATGAC ACGCCGGCGC TCGTCTTCAC CTGGACGCCG
CCGCACGATC CGACGATCAC CGCCGTCCGC TTTGTCTATC AGATCGAGGG CACGACAGAG
ATCTTCGAGG ATCAGTGCAC CTCACCCGAG GACGGTAGCT TCCGCACCAC GAAGAACGTC
GTCTCCGGTA AGGTCTACAA TGCCCGGGCG ACGATCACGA CTGTGCCCGA CCGACTGCGC
ACCTTCACGC CCTGGATGAC GACGGCACAG CCGACGGGCT TGCAGACGCT GCTGACCGGC
TTGCAACAGC TGCAGGACGA TGCGCTGAAC CGCTTCAAGG AACTGCAGCA GGAGATGGAC
GAATTCTTCC GGCCGCGCCT GGTCGAGCTG CTGGATGCTT TCTCACTTGA GGGTGCTGTC
GGACAGATCG AGCGCCAGCA GATCGTTGCC ACCATAGGTG ATGCGCTGGC GCAGATCACC
GAGGAGCGCC GGGTTCGCGT CTCCGAGAAC GAGGCGATGG CGCAGTTGCT CACCTACCTG
CAGGCTAGCC TCGGCACCAC ACATGCCCGG CTGATCACCG AGGAGACCGT GCGCGCAACG
ACGGACAGCG CCCTCGCAAG CTCGATCACG ACACTCGACG CTGAAGTCGA TGGCAACCTC
GCCCGCTTGA TCGCCGAGGA GACCGCTCGC GCAGACGGCG ACGGCGCACT CGCGAGCAGC
ATCAGCGGCG TGAGCGCCGA TTTCAACGGC CGGTTCGCAC AAGGGCTGGT GAAGTTCGAG
GCGGTCGCGG CGCCGACCGG CGTTGATGCG CGTTTCTCGG TGTTGTTGCG GGCCGGGACC
AACCAGAGCT TCAAGGTGTC GGGCTTCTAT GTCGAGCTTT ACACCGAAGG CGGTGTGCAG
AAGTCGCGCA TGGCCGTGCA GGCAGATCAG TTCCTCGTCA CGTCAGGCAA TAACCGCCAT
TACCCACTCG TCTTCGAAAA CGGCGAGTTG AAGCTGGCGA TTGCCAACAT CGGCACGGTC
AATGCCGGTC TTCTTCAGTC GCTGAACGGC AAAATGAAAA TCGACCTCAA CAACGGCACG
ATCGAGATCT TCAGCTGA
 
Protein sequence
MAIFTGIATA IAGALFGGSA LATSLIGGAL AFGAKFAVGK LTQQKQGKQK HTAVQGEIQF 
GGDVPVGTLY GVGKTKGQRA FYAKWDKGNK RNAEVFILAN GWCDGLEPYV YMYGEKYNLV
AQATIGNEVA RYGVERFIDG DGNSAISIRF YDGRPGQGVD QRLVDVTANL GNKWKATSKL
SGMCYVVVER YYHLEFFRDA GKGKPDIDFV LRGLREYDPR KDSTVAGGSG TQRLTMPSTW
VHTKNPALHR LNYQLGLRAL VSGRTLIGEG KSLGQIDLAT YFVAMNVCDT LRANGKKTYE
CSLFVSGDDD HTEVLKQFDD AMAGYGLNRR GLSGVIPGAP QIPVKDLTAA DIPIDRAKDV
QFRPSAFERF NHLSGQFTSI ESMWNPESLK PVYVNADIAA DGRNRQTSID FLQVTDPDIA
QYLLNIRYRQ NRMGGKATVP VSRRFGLAVQ EGEWITWRGK SWLISEWRAD ERLRITLVLS
ETSAAIYDDD GIEPGPIVVP PTPPINPSLL STVQNFNVAA GMINGAQGYD TPALVFTWTP
PHDPTITAVR FVYQIEGTTE IFEDQCTSPE DGSFRTTKNV VSGKVYNARA TITTVPDRLR
TFTPWMTTAQ PTGLQTLLTG LQQLQDDALN RFKELQQEMD EFFRPRLVEL LDAFSLEGAV
GQIERQQIVA TIGDALAQIT EERRVRVSEN EAMAQLLTYL QASLGTTHAR LITEETVRAT
TDSALASSIT TLDAEVDGNL ARLIAEETAR ADGDGALASS ISGVSADFNG RFAQGLVKFE
AVAAPTGVDA RFSVLLRAGT NQSFKVSGFY VELYTEGGVQ KSRMAVQADQ FLVTSGNNRH
YPLVFENGEL KLAIANIGTV NAGLLQSLNG KMKIDLNNGT IEIFS