Gene Smed_1613 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1613 
Symbol 
ID5322471 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1707483 
End bp1709294 
Gene Length1812 bp 
Protein Length603 aa 
Translation table11 
GC content63% 
IMG OID640790557 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001327289 
Protein GI150396822 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.183078 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.160096 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAGAA TTCGGATTTC GGCGCGTCTT TACGCGCTGG TGGCGTTTGC GCTGCTGACG 
ATGGCGGCGG CGCTGACCTT CGGACTGGTT CAGGCGCAGG ACAGGCTGGT CGCCGAGCGG
AAGGCCATGC TCGCGGCGAT GAACGAGAAC GCAATCACAG TGTTCAATGC CTATCACGGC
CAGGAAAAGG CCGGAAGGGT GTCGCGCAAA GAAGCACAGA GCCGCGCCCT GGAGGCGGTC
AGGGCTATGC GCTATCAGGA AAGCGGCTAT TTCTGGGTGA ACGATATGCA TCCGACAATG
GTGATGCATC CCATTAAACC TGAACTCGAT GGCGCCGACC TGACGCAGAA CAAGGATCCA
AACGGCAAGT TCCTGTTCGT TGAGTTCGTG AAGACGGTTG AAGCACATGG AAAGGGCTTC
GTCGACTATT ACTGGCCGAA GCCCGGCGCG GACGAGCCTG TGCTTAAGTA TTCGCATGTG
GCCGGTTTCG AGCCCTGGGG ATGGGTGGTC GGTACCGGTG TTTACGCCGA CGATCTCGCC
GCCATGTTCC GCGAGCGCGC ATGGCAGATG GCCGGCATTC TGGCCGCGGC CGCGCTTGCG
ATCCTCATGG CGGCATTGGC TATCGTGCGC AGCGTGGTCC GGCCCATCGA AAAGCTGAAG
ATCTCGATGC GGGCGATCGC GGACGAGAAC CTTTCCCTGG ATGTTCCGGA AACCGATCGC
GCCGACGAGA TCGGGCAGAT GGCGAAGGTG CTGGTCGTGT TGCGCGACTC GGTCAAGGAG
CGATTAGAGC TTCGTTCGCG CGAGGCGGAA CAGCAGGACC GTCTGGATTC CGAACGGCGC
GGCAATGAAG AGCTCCAGCG AAAGACTGCC GCGATCCAGG CCGAGGCGAT GGAGACACTC
GGGGCGGCTC TGGAGCGGCT GGCAAGCGGC GACCTGACCG CCGAGGTCGC GCGGATCGCG
CCGGAATACA CCAAGCTCAA GGACGACTTC AACACGGCCG CCGCGGCGCT TCGCGACGTC
ATTGGCGCGA TCTCCCAATC GACCGAAATC GTCCATGGCA GCGCCGCCGA TATCTCGGAA
GCGGCCAACA ACCTGTCGCG CCGTACGGAG CAGCAGGCGG CGGCTCTTGA GGAAACGGCA
GCCGCACTTG ATGAGATAAC CTCCACCGTA CGCCATGCGT CGGACCGCGC CCATGAAGCG
CGCGACATGG TAGACGAGAC GAAGGCGAGT GCCGCGAAAT CCGGCGGCAT CGTCCGCAAT
GCGATCGATG CCATGGGGCG GATCGAAGCG TCGTCCAGCC GGATCAGCCA GATCATCGGG
GTGATCGACG AGATCGCCTT CCAGACGAAC CTGCTCGCGC TCAATGCAGG CGTCGAGGCG
GCGCGGGCAG GGGAAGCCGG ACGCGGCTTC GCGGTCGTTG CCCAGGAGGT TCGCGAGCTC
GCACAACGCT CGGCCGGCGC GGCAAAGGAA ATCAAGGACC TGATAGCCAC TTCGGTCAAG
GAGGTCGGTG CCGGCGTCGA ACTCGTCCGC TCGACGGGCG ACGCGCTGAT GGAGATCGAG
TCCCTGGTCA ACCGCGTCAA TGAACAGGTG GCTTCCATCG CAACCGCGGC TCGGGAACAG
GCAACCGGAC TGCAGGAGGT AAACACAGCC GTCAACAGCA TGGATCAGAT GACGCAGCAG
AATGCGGCCA TGGTCGAGGA GACGACCGCG GCAAGCCAGA CGCTGGCGCA GGAAAGCCGC
GAGTTGAAGG CGCTGCTCGG ACAGTTCCGG CTGCAGGAGG GCGCGCAGCC GGCATATGGC
AGAGCAGCCT AA
 
Protein sequence
MRRIRISARL YALVAFALLT MAAALTFGLV QAQDRLVAER KAMLAAMNEN AITVFNAYHG 
QEKAGRVSRK EAQSRALEAV RAMRYQESGY FWVNDMHPTM VMHPIKPELD GADLTQNKDP
NGKFLFVEFV KTVEAHGKGF VDYYWPKPGA DEPVLKYSHV AGFEPWGWVV GTGVYADDLA
AMFRERAWQM AGILAAAALA ILMAALAIVR SVVRPIEKLK ISMRAIADEN LSLDVPETDR
ADEIGQMAKV LVVLRDSVKE RLELRSREAE QQDRLDSERR GNEELQRKTA AIQAEAMETL
GAALERLASG DLTAEVARIA PEYTKLKDDF NTAAAALRDV IGAISQSTEI VHGSAADISE
AANNLSRRTE QQAAALEETA AALDEITSTV RHASDRAHEA RDMVDETKAS AAKSGGIVRN
AIDAMGRIEA SSSRISQIIG VIDEIAFQTN LLALNAGVEA ARAGEAGRGF AVVAQEVREL
AQRSAGAAKE IKDLIATSVK EVGAGVELVR STGDALMEIE SLVNRVNEQV ASIATAAREQ
ATGLQEVNTA VNSMDQMTQQ NAAMVEETTA ASQTLAQESR ELKALLGQFR LQEGAQPAYG
RAA